Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0811
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.37 
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.1  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    25   8.0  

>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 27  LTAILACASTQTFDEQTEINARQERLVTNQVASAIENIRKQIRE 158
           LTA L C     FD  T  N    R++    +S + N   ++RE
Sbjct: 142 LTADLLCVHANDFDFDTSTNTTNGRILARNASSLLMNSTDKVRE 185


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 469 ADAYTHFSTNTKVVYGGTSTGASVAFVIEHIKLNTGSTD 353
           A + THFST + +  GGTS    +   ++ + L+ G  D
Sbjct: 254 ASSVTHFSTPSMLPIGGTSLDDELLAPVDDLNLDLGLDD 292


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +2

Query: 194 NCHP-SRGRLPCTCRFRRGHQSTGLSNIVIITNNFSILSARLNLVLSLPRVEASVGAARV 370
           NC P S          R GH++  + N  ++ +  S+   +  L +    +   V  AR+
Sbjct: 301 NCSPDSYNATETLSTLRFGHRAKSIKNKAVVNSELSVDEMKRQLYIYKDALSRCVCGARI 360

Query: 371 ELNVFDY 391
             N+ DY
Sbjct: 361 NNNL-DY 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,754
Number of Sequences: 5004
Number of extensions: 51064
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)