Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0811
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64920.1 68418.m08166 COP1-interacting protein (CIP8) / zinc ...    30   1.3  
At5g40740.1 68418.m04944 expressed protein                             29   3.0  
At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138...    28   6.9  

>At5g64920.1 68418.m08166 COP1-interacting protein (CIP8) / zinc
           finger (C3HC4-type RING finger) family protein identical
           to COP1-interacting protein CIP8 [Arabidopsis thaliana]
           gi|5929906|gb|AAD56636; contains Pfam profile: PF00097
           zinc finger, C3HC4 type
          Length = 334

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 551 LDATSPTPSLTSSHRPCQPLLPITGPQSTGFGIYLLQII 667
           +++  PTP+  SS  P QPL P    + +  G + LQ++
Sbjct: 43  VESIQPTPAAYSSPAPPQPLSPDLNVEDSSIGSHFLQML 81


>At5g40740.1 68418.m04944 expressed protein
          Length = 741

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 51  STQTFDEQTEINARQERLVTNQVASAIENIRKQIREA 161
           S +   +Q   NAR + L T+  +S + N++K +REA
Sbjct: 554 SEKNSTDQALSNARPDNLPTDTSSSFVHNLKKSVREA 590


>At3g30300.1 68416.m03826 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 677

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 22  LFSPQFWLVPVHKLLMNRRR*THVKSAWSLTRLL-PPSKISESK*EKPDSIHWTLIEEKL 198
           +F  Q  L+P+H +  N    T + ++W L ++    +K ++ K   P SI    +E K 
Sbjct: 363 VFGGQRTLIPLHGMFENVVDRTSLSTSWELAKMYGREAKHNDIKKMTPPSIE---VETKH 419

Query: 199 SSLQRKTSMHLPLSP 243
            SL+       PL P
Sbjct: 420 DSLKSTRQRPQPLPP 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,568
Number of Sequences: 28952
Number of extensions: 272712
Number of successful extensions: 732
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)