Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0809
         (773 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    25   0.67 
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    25   0.89 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   1.6  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   2.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   2.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.7  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   3.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   3.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   3.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.6  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   3.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.3  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
 Frame = +3

Query: 381 PSPTATLLLWT----GVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTRRRQLGSSPLDWL 548
           P P      W      V  PTV   +P  EFP + SS A      ++R   LGS+    L
Sbjct: 190 PQPVLPTYKWMQVKRNVPKPTV-PKIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSML 248

Query: 549 QL 554
            L
Sbjct: 249 SL 250


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
 Frame = +3

Query: 381 PSPTATLLLWT----GVVLPTVYTTLPSMEFPVSDSSLATFWSGSSTRRRQLGSSPLDWL 548
           P P      W      V  PTV   +P  EFP + SS A      ++R   LGS+    L
Sbjct: 190 PQPVLPTYKWMQVKRNVPKPTV-PKIPPAEFPTTSSSSALESPDPASRSSCLGSNTSSML 248

Query: 549 QL 554
            L
Sbjct: 249 SL 250


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 236 QPSSYYNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVNT 358
           Q ++ Y+G V    N++YNG+ P ++    +  N N+A+ T
Sbjct: 426 QKNAEYSGKVGYYENNHYNGD-PNYISPEVF-PNTNNAIMT 464


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 236 QPSSYYNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVNT 358
           Q ++ Y+G V    N++YNG+ P ++    +  N N+A+ T
Sbjct: 374 QKNAEYSGKVGYYENNHYNGD-PNYISPEVF-PNTNNAIMT 412


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 444 LPSMEFPVSDSSLATFWSGSSTRRRQLGSSPLDWLQL 554
           +P  EFP + SS A      ++R   LGS+    L L
Sbjct: 3   IPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSL 39


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 444 LPSMEFPVSDSSLATFWSGSSTRRRQLGSSPLDWLQL 554
           +P  EFP + SS A      ++R   LGS+    L L
Sbjct: 3   IPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSL 39


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 412 VHNNNVAVGDGQQGG 368
           V+NN +  GDG  GG
Sbjct: 505 VYNNKIPTGDGALGG 519


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 546 ANQVDSTPIAASVLMSQTKKLPRNCPTLGTP 454
           A+   ST +A+   +S     PR+ P L TP
Sbjct: 102 ADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 546 ANQVDSTPIAASVLMSQTKKLPRNCPTLGTP 454
           A+   ST +A+   +S     PR+ P L TP
Sbjct: 102 ADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 681 SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 529
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 546 ANQVDSTPIAASVLMSQTKKLPRNCPTLGTP 454
           A+   ST +A+   +S     PR+ P L TP
Sbjct: 102 ADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 681 SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 529
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 546 ANQVDSTPIAASVLMSQTKKLPRNCPTLGTP 454
           A+   ST +A+   +S     PR+ P L TP
Sbjct: 102 ADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 681 SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 529
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 546 ANQVDSTPIAASVLMSQTKKLPRNCPTLGTP 454
           A+   ST +A+   +S     PR+ P L TP
Sbjct: 102 ADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 681 SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 529
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 546 ANQVDSTPIAASVLMSQTKKLPRNCPTLGTP 454
           A+   ST +A+   +S     PR+ P L TP
Sbjct: 58  ADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 88



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 681 SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 529
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 96  SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 147


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 546 ANQVDSTPIAASVLMSQTKKLPRNCPTLGTP 454
           A+   ST +A+   +S     PR+ P L TP
Sbjct: 102 ADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 681 SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 529
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 546 ANQVDSTPIAASVLMSQTKKLPRNCPTLGTP 454
           A+   ST +A+   +S     PR+ P L TP
Sbjct: 102 ADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 546 ANQVDSTPIAASVLMSQTKKLPRNCPTLGTP 454
           A+   ST +A+   +S     PR+ P L TP
Sbjct: 102 ADSTSSTGVASPQDLSTNGAPPRSTPPLSTP 132



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 681 SSCVTVQGLVVTTPPGPSRIQTGNP-VGSATSLSSSVTDNVRAQAEANQVDS 529
           SS +T    V T+PPG     T +  + S  S +SS +   +A    N   S
Sbjct: 140 SSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSSTSSTEKAGTNNNNSKS 191


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 331 QQRKLRCEHHDPPRLAGRLRLQRYCCGL 414
           Q R+++ +  D P  AG+      CC L
Sbjct: 166 QNRRVKYKKEDLPAAAGKASNGNKCCCL 193


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,750
Number of Sequences: 336
Number of extensions: 5211
Number of successful extensions: 28
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)