Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0809
(773 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 36 0.009
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 28 1.3
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 28 1.3
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 27 2.3
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.0
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 27 3.9
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 3.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.9
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 5.2
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 6.9
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 9.1
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 35.5 bits (78), Expect = 0.009
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Frame = -3
Query: 744 TMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSATSL---SSSV 574
T S +V T T V L ++C T + T+ P S T ++TS+ S+ V
Sbjct: 451 TTSTSVPYTS-TPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPV 509
Query: 573 TDNVRAQAEANQVDSTPIAASVLMSQTKKLPRNCPTLGTPL-TAVLYRPLARPRQSTTIT 397
T + + + V STP+ + + T L + P TPL T + P ST +T
Sbjct: 510 TSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVT 569
Query: 396 LQSETASKA 370
+ T S +
Sbjct: 570 SSNYTISSS 578
Score = 29.5 bits (63), Expect = 0.56
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = -3
Query: 618 TGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMSQTKKLPRNCPTLGTPLTAV- 442
T PV S +++ T + + V STP+ + + T + P TPLT
Sbjct: 436 TSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTN 495
Query: 441 LYRPLARPRQSTTITLQSETASKA 370
+ P ST +T + T S +
Sbjct: 496 CTTSTSVPYTSTPVTSSNYTISSS 519
Score = 29.1 bits (62), Expect = 0.74
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Frame = -3
Query: 681 SSCVTVQGLVVTTPPGPSRIQTGNPVGSATSLSSS-VTDNVRAQAEANQVDSTPIAASVL 505
+SC T + T T P S+T L+++ T + + V STP+A +
Sbjct: 391 TSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNC 450
Query: 504 MSQTKKLPRNCPTLGTPLTAV-LYRPLARPRQSTTIT 397
+ T + P TPLT + P ST +T
Sbjct: 451 TTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVT 487
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/82 (26%), Positives = 28/82 (34%)
Frame = -3
Query: 648 TTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMSQTKKLPRNCP 469
T PP S TG S S+S T + N +TP+ +V + T P
Sbjct: 315 TPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNS--TTPVTPTVPPTSTSSTSTPPP 372
Query: 468 TLGTPLTAVLYRPLARPRQSTT 403
T T PL S T
Sbjct: 373 PASTSSTGTSSSPLLSTSTSCT 394
Score = 25.8 bits (54), Expect = 6.9
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Frame = -3
Query: 771 GFCTVGVKVTMSNAVKNTEKTTVGVDCLHISSCVTVQGLVVTTPPGPSRIQTGNPVGSAT 592
G ++ +T + +T T++ + SS T + TT + + P G ++
Sbjct: 126 GSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSS 185
Query: 591 SLSSSVTDNV-RAQAEANQVDSTPIAASVLMSQTKKLP 481
SLS+ +T V + + P + S + + LP
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLP 223
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = -3
Query: 666 VQGLVVTTPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMS 499
V G TTP + + + S SLSS+ TDN+ A V T +AASV S
Sbjct: 146 VYGDSATTPAASEAQASSDILSSLASLSSASTDNLAA-----SVTPTTVAASVASS 196
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 135 PHLVDLEEPAEEDILMSRNGANNQYWLFTRRNQNNHQVITMAMSTLSGT 281
P L+ P+E++ L+SR+G +Y L T N +N + + + + + GT
Sbjct: 246 PSLIHSTVPSEQEPLISRHG---RYKLQTPGNASNGKAVLLLLKSFVGT 291
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 173 HPYVKERCKQPILAFHQT*PKQPSSYYNGNVNSIRNSNYN 292
HP + R + L F +T P PSS +G N++ N N
Sbjct: 141 HPPKRVRNEDDSLTFSKTSPVSPSSLKDGASNTVTNDASN 180
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = -3
Query: 645 TPPGPSRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMSQTKK 487
TP S + + S+T +SSS+T ++ + A ++ S+ ++ + S K
Sbjct: 148 TPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAK 200
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.1 bits (57), Expect = 3.0
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Frame = -3
Query: 636 GPSRIQTGN--PVGSATSLSSS------VTDNVRAQAEANQVDSTPIAASVLMSQTKKLP 481
GPSR T + PVG++ S+ + + D +A+A + S P+A S SQ +
Sbjct: 297 GPSRFPTNSNVPVGNSMSIRDTDSPLNILVDKAKAKASIKENASQPVAPSA--SQREHSA 354
Query: 480 RNCPTLGTPLTAVLYRPLARPRQSTTI 400
N P + ++ A P+ ++
Sbjct: 355 VNSPAAAMSPSTAMFSSEAFPQHLASL 381
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 398 VIVVDWR-GLANGLYNTAVNGVPSVGQFLGNFLVWLINTEAAI 523
++ V WR +A+G TA G+ + QF G +W+I+T A +
Sbjct: 61 IVPVTWRVKIADGA-KTATTGLSKLAQF-GGKSMWVISTSALL 101
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 420 VLPTVYTTLPSMEFPVSDSSLATFWSGSSTRRRQLGSS 533
VLPT T S VS SSL++F ST GS+
Sbjct: 244 VLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGST 281
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.9
Identities = 25/63 (39%), Positives = 29/63 (46%)
Frame = -1
Query: 743 P*AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPACRPALPTT 564
P A S P PPS+ + + AP L A + PP PAG LPPA PA P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL--PAGMPAAP--PLPPAA-PAPPPA 479
Query: 563 CAP 555
AP
Sbjct: 480 PAP 482
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = -1
Query: 647 PPHLGPA-GSKPVTL-----LGLPPACRPALPTTCAPKLKPI 540
PP P+ G +P L + PPA PA+P AP L P+
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 114 SKRIGLHLPHSDCCLQGSW 58
S + LPHSD L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 78 SHYVEGVSRYVWMPDGEGVPHLVDLEEPAEEDILMSR 188
S Y +G+S V + G+GV H+V + E + L+ R
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 266 NSIRNSNYNGNLPLFVIVHGWNSNGN 343
+SIRNS++N L LF V S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,494,424
Number of Sequences: 5004
Number of extensions: 77098
Number of successful extensions: 267
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -