Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0809
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05510.1 68415.m00583 glycine-rich protein                          31   0.85 
At2g37925.1 68415.m04655 copper transporter family protein simil...    31   1.1  
At5g11690.1 68418.m01366 mitochondrial import inner membrane tra...    30   2.0  
At5g45500.1 68418.m05589 expressed protein weak similarity to re...    29   2.6  
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138...    29   2.6  
At1g54990.1 68414.m06281 expressed protein                             29   4.5  
At5g08230.1 68418.m00965 PWWP domain-containing protein putative...    28   6.0  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    28   6.0  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    28   6.0  
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro...    28   6.0  
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro...    28   6.0  
At3g32940.1 68416.m04174 expressed protein                             28   7.9  
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /...    28   7.9  

>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
 Frame = +1

Query: 493 GLAHQHGGGNWGRVHLI---GFSLGAHVVGNAGRQAGGRPNRVTGLDPAGPRWGGNNQAL 663
           G  H HGG N G  H +   G   G H  G  G   GG  +   G    G   GG    L
Sbjct: 58  GGGHGHGGHNGGGGHGLDGYGGGHGGHYGGGGGHYGGGGGHGGGGHYGGGGHHGGGGHGL 117

Query: 664 N 666
           N
Sbjct: 118 N 118


>At2g37925.1 68415.m04655 copper transporter family protein similar
           to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
           thaliana}; contains Pfam profile PF04145: Ctr copper
           transporter family; supporting cDNA
           gi|18496855|gb|AF466372.1|
          Length = 145

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 311 VIVHGWNSNGNSAVNTMIRPALLAVS-----DCNVIVVDWRGLANGLYNTAV 451
           V+V  WN+   +   T  RP+LL  +     +C V+   W G   G+Y  A+
Sbjct: 8   VVVEAWNTTTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALAL 59


>At5g11690.1 68418.m01366 mitochondrial import inner membrane
           translocase subunit Tim17, putative similar to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}; contains Pfam profile
           PF02466: Mitochondrial import inner membrane translocase
           subunit Tim17
          Length = 133

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 532 VHLIGFSLGAHVVGNAGRQ-AGGRPNRVTGLDPAGPRWGGNNQALNRNAGAYVEAIHTDG 708
           V+ IG++ GA  VG +      G  N      P G R+ G  QA + NA          G
Sbjct: 16  VNAIGYAFGAGAVGGSVYHFVRGAYN-----SPIGARYVGGTQAASMNAPRLGGTFAVFG 70

Query: 709 GLLGIFD 729
           GLL  FD
Sbjct: 71  GLLSTFD 77


>At5g45500.1 68418.m05589 expressed protein weak similarity to
           resistance complex protein I2C-2 [Lycopersicon
           esculentum] GI:2258317
          Length = 489

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 184 QGTVQTTNTGFSPDVTKTTIKLLQWQCQLYPELELQWKPASLCYCPRLEQQRKLRC 351
           +G ++ T  G S     +  K+   + +  P+L+++W+  S  Y P L+   K +C
Sbjct: 412 KGGIKLTGFGKSLPSQNSKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQC 467


>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 579

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -3

Query: 519 AASVLMSQTKKLPRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRIMVFTAEF 340
           A S + S  +KL   CP     +T +L R L  PR +       E       +   T+EF
Sbjct: 393 AKSSMTSNERKLAGLCPLNAKEVTRLL-RALGAPRDARIYWAGGEPLGGKEALKPLTSEF 451

Query: 339 PLLFQPWTI 313
           P L+  + I
Sbjct: 452 PHLYNKYDI 460


>At1g54990.1 68414.m06281 expressed protein
          Length = 473

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 479 LGNFLVWLINTEAAIGVEST*LASAWARTLSVTLDDRLVADPTGLPVWI 625
           LG   V L+  ++A+G+ S  ++  W    SVTL D  ++    LP+W+
Sbjct: 239 LGLAPVHLVLHDSALGLASNWVSENWQSVRSVTLIDSSIS--PALPLWV 285


>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
            transcription factor (HUA2) - Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1445

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -1

Query: 767  SAPLG*KSP*AMRSKIPRRPPSVWIAST*APALRFRAWLLPPHLGPAGSKPVTLLGLPPA 588
            S PL  +SP +   + P  PP        APA       LPP   P    P   + LPP+
Sbjct: 1125 SPPLPHESPPSPPPQPPSSPPPPSSPPQLAPAPPPSDHCLPPPTAPLA--PAQSIALPPS 1182

Query: 587  --CRPALPTTCAPKLKP 543
               RP++P+  +  L+P
Sbjct: 1183 SITRPSMPSHPSLPLQP 1199


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 710 PPSVWIAST*APALRFRAWLLP-PH-LGPAGSKPVTLLGLPPACRPALPTTCAPK 552
           PP++  AST  P+ R     +P P    P G+ P  +   PP+ R   PT   P+
Sbjct: 175 PPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPR 229


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 710 PPSVWIAST*APALRFRAWLLP-PH-LGPAGSKPVTLLGLPPACRPALPTTCAPK 552
           PP++  AST  P+ R     +P P    P G+ P  +   PP+ R   PT   P+
Sbjct: 174 PPTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPR 228


>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
           protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
           zinc finger-containing protein ZiGA4 GI:10441354 from
           [Arabidopsis thaliana]; contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 648

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 630 SRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMSQTKKLPRNCP 469
           SR  TG+  G  ++    V ++ +A  +  Q+   P+A SV   Q    PR+ P
Sbjct: 301 SRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGAPVAQSVDTFQPSIAPRSPP 354


>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
           protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
           zinc finger-containing protein ZiGA4 GI:10441354 from
           [Arabidopsis thaliana]; contains InterPro accession
           IPR001164: Human Rev interacting-like protein (hRIP)
          Length = 649

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 630 SRIQTGNPVGSATSLSSSVTDNVRAQAEANQVDSTPIAASVLMSQTKKLPRNCP 469
           SR  TG+  G  ++    V ++ +A  +  Q+   P+A SV   Q    PR+ P
Sbjct: 301 SRQNTGSQQGKTSNHVPLVAESTKAPIDLFQLPGAPVAQSVDTFQPSIAPRSPP 354


>At3g32940.1 68416.m04174 expressed protein
          Length = 607

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 438 TTLPSMEFPVSDSSLATFWSGSSTR 512
           T +PS+ FP + S +A + SGSS R
Sbjct: 417 TEIPSIPFPSASSLIAEYGSGSSLR 441


>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
           gibberellin-responsive modulator identical to GB:Y11336,
           member of SCARECROW family
          Length = 587

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +1

Query: 529 RVHLIGFSLGAHVVGNAGRQA-----GGRPN-RVTGLDPAGPRWGGNNQALNRNAGAYVE 690
           RVH+I FS+   +   A  QA     GG P  R+TG+ P  P    +   +        E
Sbjct: 322 RVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNSDHLHEVGCKLAQLAE 381

Query: 691 AIHTD 705
           AIH +
Sbjct: 382 AIHVE 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,314,069
Number of Sequences: 28952
Number of extensions: 465498
Number of successful extensions: 1654
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1644
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)