Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0808
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 162 4e-41
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 52 8e-08
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 36 0.006
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 30 0.38
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.7
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 6.1
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 26 6.1
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 25 8.1
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 8.1
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 162 bits (394), Expect = 4e-41
Identities = 79/84 (94%), Positives = 81/84 (96%)
Frame = +2
Query: 257 AYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFL 436
AYPGDVFYLHSRLLERAAKMS K GGGSLTALPVIETQ GDVSAYIPTNVISITDGQIFL
Sbjct: 321 AYPGDVFYLHSRLLERAAKMSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFL 380
Query: 437 ETELFYKGIRPAINVGLSVSRVGS 508
E+ELF+KGIRPAINVGLSVSRVGS
Sbjct: 381 ESELFFKGIRPAINVGLSVSRVGS 404
Score = 126 bits (304), Expect = 3e-30
Identities = 56/75 (74%), Positives = 70/75 (93%)
Frame = +3
Query: 3 QKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALII 182
QKRSTVAQ+V++L + ++ Y+IIV+ATAS++APLQYLAP+SGCAMGE+FRDNGKH L++
Sbjct: 236 QKRSTVAQLVQKLEENDSLKYSIIVAATASESAPLQYLAPFSGCAMGEWFRDNGKHGLVV 295
Query: 183 YDDLSKQAVAYRQMS 227
YDDLSKQAVAYRQMS
Sbjct: 296 YDDLSKQAVAYRQMS 310
Score = 71.3 bits (167), Expect = 1e-13
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +3
Query: 576 VAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAII 713
VA+FAQFGSDLDA T+ L+RG+RLTELLKQ QY P+A+EEQV +I
Sbjct: 428 VASFAQFGSDLDAGTRATLDRGLRLTELLKQPQYSPLAVEEQVPLI 473
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1
Query: 508 SAQTKAMKQVAGSMKLELAQYRE 576
+AQ KAMKQVAG +KL LAQYRE
Sbjct: 405 AAQVKAMKQVAGQIKLFLAQYRE 427
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 52.0 bits (119), Expect = 8e-08
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +2
Query: 221 DVSTAASS-PRP*AYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIP 397
+VS A P YPG ++ S + ERA ++ + GS+T +P++ D++ IP
Sbjct: 287 EVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGR--NGSITQIPILTMPNDDITHPIP 344
Query: 398 TNVISITDGQIFLETELFYKGIRPAINVGLSVSRV 502
IT+GQIF++ +L I P INV S+SR+
Sbjct: 345 DLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRL 379
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +3
Query: 66 TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMS 227
T +V+ T++ + + Y+G + E++RD GK+ ++ D S+ A A R++S
Sbjct: 317 TTLVANTSNMPVAAREASIYTGITLAEYYRDQGKNVSMMADSTSRWAEALREIS 370
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 335 GSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSLL 514
G+++ + + GD S + + + I L+ +L + P+IN LS S+ + L
Sbjct: 410 GTVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSYSKYINAL 469
Query: 515 RPRL*SRWP 541
+P R P
Sbjct: 470 QPWYEERVP 478
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 29.9 bits (64), Expect = 0.38
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = +3
Query: 456 KVSDQPSTSVCLYRVSDLCSDQGYEAGGRFHEAGIGSVP*VAAFAQFGSDLDAATQQLLN 635
K ++P+T+ LY D S+QG +A F+ A + +P + FA + T
Sbjct: 199 KYLEKPTTTFALY--GDGASNQG-QAFEAFNMAKLWGLPVI--FACENNKYGMGTSA--E 251
Query: 636 RGMRLTELLKQGQYVP 683
R +TE K+GQY+P
Sbjct: 252 RSSAMTEFYKRGQYIP 267
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 631 SSCCVAASKSEPN-WAKAATHGTEPIPASWNRPPA 530
+S V++S S P WAK A+ PA W +P A
Sbjct: 412 ASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAA 446
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 562 AQYRESQLLPSSVLTWMPLHSSCST 636
AQY S LLPSS + PL S+ ST
Sbjct: 274 AQYNTSSLLPSSTPSSTPLSSANST 298
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 173 GVFAIITEKFTHGTTR-VRSQVLQGSSIGSGGRHDDCVVDGTSISQSLHNLSYS 15
G+ ++ E F H R + S L G G+ +CV+ S S S N++YS
Sbjct: 152 GIAKLLRESFIHAPGRDLDSNFLLGIYNLFLGQAQECVLGHMSFSASDSNMNYS 205
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 152 EKFTHGTTRVRSQVLQGSSIGSGGRHDDCVVDGTS 48
+KFT V S + GS I S DD + DG+S
Sbjct: 80 DKFTFSDAAVNSAGMGGSGIFSHNNADDGLGDGSS 114
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 556 ELAQYRESQLLPSSVLTWMPLHSSCSTEECVLLSSSSKDNMCPW-LLRNRSP 708
+L +Y +V T+ L S T++C + +S KDN +NRSP
Sbjct: 123 QLLEYALEVERDDNVFTYAKLQKSDMTQKCPTMVASEKDNKGKLNEKKNRSP 174
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 589 PSSVLTWMPLHSSCSTEECVLLSSSSKDN 675
P L W PLH + + LL+S SKDN
Sbjct: 222 PIMALCWQPLHLAPDSGP-YLLASGSKDN 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,656
Number of Sequences: 5004
Number of extensions: 61560
Number of successful extensions: 187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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