Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0808
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)             167   1e-41
SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07)          160   9e-40
SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                128   4e-30
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 37   0.019
SB_48194| Best HMM Match : Dysbindin (HMM E-Value=3.1)                 31   1.2  
SB_25083| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.8  
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   2.8  
SB_44417| Best HMM Match : RdRP_2 (HMM E-Value=5.6)                    29   4.9  
SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score =  167 bits (405), Expect = 1e-41
 Identities = 81/84 (96%), Positives = 82/84 (97%)
 Frame = +2

Query: 257 AYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFL 436
           AYPGDVFYLHSRLLERAAKM+D  GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFL
Sbjct: 242 AYPGDVFYLHSRLLERAAKMNDSNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFL 301

Query: 437 ETELFYKGIRPAINVGLSVSRVGS 508
           ETELFYKGIRPAINVGLSVSRVGS
Sbjct: 302 ETELFYKGIRPAINVGLSVSRVGS 325



 Score =  146 bits (353), Expect = 2e-35
 Identities = 69/75 (92%), Positives = 73/75 (97%)
 Frame = +3

Query: 3   QKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALII 182
           QKRSTVAQ+VK++TDA A+ YTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALII
Sbjct: 157 QKRSTVAQLVKKMTDADAMKYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALII 216

Query: 183 YDDLSKQAVAYRQMS 227
           YDDLSKQAVAYRQMS
Sbjct: 217 YDDLSKQAVAYRQMS 231


>SB_42081| Best HMM Match : ATP-synt_ab (HMM E-Value=8.3e-07)
          Length = 99

 Score =  160 bits (389), Expect = 9e-40
 Identities = 76/84 (90%), Positives = 81/84 (96%)
 Frame = +2

Query: 257 AYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFL 436
           AYPGDVFYLHSRLLERAAK+SD +G GSLTALP+IETQAGDVSAYIPTNVISITDGQIFL
Sbjct: 4   AYPGDVFYLHSRLLERAAKLSDALGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFL 63

Query: 437 ETELFYKGIRPAINVGLSVSRVGS 508
           ++ELFY GIRPAINVGLSVSRVGS
Sbjct: 64  DSELFYNGIRPAINVGLSVSRVGS 87


>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 313

 Score =  128 bits (309), Expect = 4e-30
 Identities = 65/101 (64%), Positives = 80/101 (79%), Gaps = 11/101 (10%)
 Frame = +2

Query: 257 AYPGDVFYLHSRLLERAAKMSDKM------GG-----GSLTALPVIETQAGDVSAYIPTN 403
           AYPGDVFYLHSRLLERA+++S++       G      GSLTALP+IETQAGDVSA++PTN
Sbjct: 85  AYPGDVFYLHSRLLERASRVSEEYVEKFTNGAVTGKTGSLTALPIIETQAGDVSAFVPTN 144

Query: 404 VISITDGQIFLETELFYKGIRPAINVGLSVSRVGSLLRPRL 526
           VISITDGQIFLE+ +F  GIRPA+N G+SVSRVG   + ++
Sbjct: 145 VISITDGQIFLESAMFNSGIRPAVNAGISVSRVGGAAQTKI 185



 Score =  107 bits (256), Expect = 1e-23
 Identities = 46/74 (62%), Positives = 65/74 (87%)
 Frame = +3

Query: 6   KRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIY 185
           K+ST+A +V++L + GA+  TI+V+A+AS++A LQ++APY+GC MGE+FRD G+ ALI+Y
Sbjct: 1   KQSTIANVVRKLEENGALANTIVVAASASESAALQFIAPYAGCTMGEYFRDRGEDALIVY 60

Query: 186 DDLSKQAVAYRQMS 227
           DDLSKQAVAYRQ+S
Sbjct: 61  DDLSKQAVAYRQIS 74



 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 25/41 (60%), Positives = 32/41 (78%)
 Frame = +3

Query: 576 VAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEE 698
           +AAFAQF SDLD AT++ L  G R+TEL+KQ QY PM+I +
Sbjct: 203 LAAFAQFASDLDEATRKQLEHGQRVTELMKQKQYAPMSIAD 243



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +1

Query: 508 SAQTKAMKQVAGSMKLELAQYRE 576
           +AQTK +K+++G ++  LAQYRE
Sbjct: 180 AAQTKIIKKLSGGIRTALAQYRE 202


>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
 Frame = +2

Query: 221 DVSTAASS-PRP*AYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIP 397
           +VS A    P    +PG ++   + + ERA ++  +   GS+T +P++     D++  IP
Sbjct: 227 EVSAAREEVPGRRGFPGYMYTDLATVYERAGRVEGR--NGSITQIPILTMPNDDITHPIP 284

Query: 398 TNVISITDGQIFLETELFYKGIRPAINVGLSVSRV 502
                IT+GQI+++ +L  + I P INV  S+SR+
Sbjct: 285 DLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRL 319


>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +3

Query: 66  TIIVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMS 227
           T +V+ T++     +  + Y+G  + E+FRD G H  ++ D  S+ A A R++S
Sbjct: 167 TALVANTSNMPVAAREASIYTGITLSEYFRDMGHHVSMMADSTSRWAEALREIS 220


>SB_48194| Best HMM Match : Dysbindin (HMM E-Value=3.1)
          Length = 314

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -1

Query: 215 VGYGLFGQIVVDNKGVFAIITEKFTHGTTRVRSQVLQGSSIGSGGRHDDCVVDGTSISQS 36
           V YGL  + +V++KG       K T  TTR  S +LQG+ +G   RH  C      I +S
Sbjct: 58  VKYGLQNRTLVNSKG------SKET--TTRGSSVLLQGTQMGYESRHAACSATNRRIHES 109

Query: 35  --LHNL 24
              HNL
Sbjct: 110 SGTHNL 115


>SB_25083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 676 YCPCLRSSVRRIPLLSSCCVAASKSEPNWAKAATHGTEPIP 554
           +C C   S +   +LS CCV+  + + N  +  THG E  P
Sbjct: 138 FCVCYGGSSKNNNILS-CCVSEKEDDTNCPQDTTHGDEENP 177


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 649  RRIPLLSSCCVAASKSEPNWAKA-ATHGTEPIPASWNRPPAS*PWSEQRS 503
            R IP++       S SEP+  K  ++ G+EP P+  +  P+   WS Q S
Sbjct: 1017 RNIPIIVRPSDGDSNSEPSIDKQDSSRGSEPPPSPLSSQPSPKRWSSQNS 1066


>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 150 FRDNGKHALIIYDDLSKQAVAYRQM 224
           +R  G HA I+YD L   +VA R+M
Sbjct: 349 YRKGGDHAYILYDSLDAASVAAREM 373


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 215 PSDVSTAASSPRP*AYPGDVFYLHSRLLERAAKMSDKMGGGSLTAL 352
           P   +T +  P P  +PGD + L S  +  +A  SD  GG S+  L
Sbjct: 159 PPHSNTGSYPPHPGEHPGDQYSLGSAGVMSSATGSDDQGGKSVLCL 204


>SB_44417| Best HMM Match : RdRP_2 (HMM E-Value=5.6)
          Length = 541

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 559 LAQYRESQLLPSSVLTW-MPLHSSCSTEECVLLSSSSKDNMCPWLL 693
           LA  R S LLPS   T    L S  +  EC L  S   + MC +LL
Sbjct: 254 LAPLRGSVLLPSHTATRECALTSHIAMRECALTFSHRYEGMCSYLL 299


>SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +1

Query: 487 VCIACRISAQTKAMKQVAGSMKLELAQYRESQLLPS-------SVLTWMPLHSSCSTEEC 645
           +  A  ++   K MK    ++ +   Q  E +L  +       SVLTW+P        E 
Sbjct: 264 IMCAAYLAIYIKVMKAKRQALNISAGQLCEQRLAKTLFIASALSVLTWVP-----DNLED 318

Query: 646 VLLSSSSKDNMCPWLLR 696
           +++S +S+ NMC  LLR
Sbjct: 319 LVISHNSEYNMCSTLLR 335


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 14   YCSSNCEEID*CWCHQLHNHRVCHR 88
            Y    CE +D C+ H   N+  C+R
Sbjct: 1834 YYGKQCETVDTCFAHACKNNATCNR 1858


>SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +1

Query: 493 IACRISAQTKAMKQVAG--SMKLELAQYRESQLLP---SSVLTW-MPLHSSCSTEECVLL 654
           + C    Q  A ++ A     K   A + E  L P   +S+  W +P H  C+     L 
Sbjct: 153 LGCEAYLQADAFQEKASRWGTKFRKATFEEVILHPCGCNSIYKWQLPSHKLCTNNRAKLD 212

Query: 655 SSSSKDNMC 681
           SS+ + N+C
Sbjct: 213 SSAREPNIC 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,516,387
Number of Sequences: 59808
Number of extensions: 514842
Number of successful extensions: 1351
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)