Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0807
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    28   1.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   5.4  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   7.2  

>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 372 AGSATI-TGATLGPSATITGLGTMMAGSAMITGETAGFSSNLIVQ 241
           AG  T+  G  LG     T LGT++  + MIT    GF + + +Q
Sbjct: 199 AGLGTLFAGLGLGTMIGATYLGTLITSAPMITALFGGFGAKMSMQ 243


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 99  GPALVEA-PIVPSPVHVGPLVPGQLTPLVHILINI 200
           G AL+   PIV S  H+ P   G+L P +H  +++
Sbjct: 781 GAALLSKFPIVNSTHHLLPSPQGELAPAIHATLDV 815


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 90  PDVGPALVEAPIVPSPVHVGPLVP 161
           P V P + EAP VP P  V P+ P
Sbjct: 592 PPVAPVVPEAPSVPQP-PVAPVAP 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,210
Number of Sequences: 5004
Number of extensions: 35124
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)