Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0807
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)               32   0.47 
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         31   1.4  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   30   2.5  
SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)                29   4.4  
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)                     28   7.6  
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   7.6  

>SB_25797| Best HMM Match : Extensin_2 (HMM E-Value=0.55)
          Length = 910

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 427 HGGHQGHVTNVHWARGHNGGV-SHDHRGYTRSLGNNYR 317
           +G HQGH+ N    +GH G V +++H   TRS G  Y+
Sbjct: 777 YGAHQGHMCNGLPEKGHYGDVGAYEHAMDTRSPGYPYK 814


>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
 Frame = -1

Query: 460 ARGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 293
           +R  +G    DHGG    H G   +    R  +GG   DH G  R  G   R     GR 
Sbjct: 2   SRRDHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGR- 60

Query: 292 SNDHGRNSR 266
             DHG   R
Sbjct: 61  --DHGGTGR 67



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
 Frame = -1

Query: 472 DEHWARGHNGRVSHDHGGHQ---GHVTNVHWARGHN-GGVSHDHRGYTRSLGNNYRARYY 305
           D    R  +G    DHGG +   G     H   G + GG   DH G  R  G   R    
Sbjct: 5   DHGSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGGTGRDHGGTGRDHGGTGRDHGG 64

Query: 304 DGRISNDHGRNSR 266
            GR   DHG   R
Sbjct: 65  TGR---DHGGTGR 74



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
 Frame = -1

Query: 457 RGHNGRVSHDHGG----HQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRIS 290
           R H G    DHGG    H G   +    R  +GG   DH G  R  G   R     G   
Sbjct: 60  RDHGG-TGRDHGGTGRDHGGTRRDHDGTRRDHGGTRRDHGGTRRDHGGTRRDH---GGTR 115

Query: 289 NDHGRNSR 266
            DHG   R
Sbjct: 116 RDHGGTRR 123


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = -1

Query: 454 GHNGRVSHDHGGHQ----GHVTNVHWARGHNGGVSHDHRGYTR-SLGNNYRARYYDGRIS 290
           GH+   SH++ GH     GH    H     N G SH H G++  + G+++    +    S
Sbjct: 310 GHSHGHSHENHGHSHENHGHSHENHGHSHENHGHSHKHHGHSHDNHGHSHENHGHSHGHS 369

Query: 289 NDHGRNSRLFFKFDCSGSTL 230
           ++H     L+   D    +L
Sbjct: 370 HEHEPKQDLYHHEDFDSYSL 389



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 427 HGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRN 272
           HG   GH    H     N G SH++ G++    N+  +  + G   ++HG +
Sbjct: 309 HGHSHGHSHENHGHSHENHGHSHENHGHSHE--NHGHSHKHHGHSHDNHGHS 358


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/65 (32%), Positives = 27/65 (41%)
 Frame = -1

Query: 472 DEHWARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNYRARYYDGRI 293
           D+   R H+ R  H HGG  G+  +     GH GG  H H G     G+     + DG  
Sbjct: 118 DDCDGRSHSHR--HAHGGGPGYGGDYGGGLGHCGGPGHGH-GPGHGHGHGAGLVHGDGGP 174

Query: 292 SNDHG 278
              HG
Sbjct: 175 GPGHG 179


>SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 787 IYLTHLMIITIINDTCKSCKLYFHVKSTCRR 695
           +Y +H     +  DT ++C L+ H+K TC R
Sbjct: 523 LYTSHRRYNLVNTDTIETCNLHRHLKKTCDR 553


>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
          Length = 442

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 114 EAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPVESVEPEQ 248
           + PI P P  +   + G    L  +++++ND  +A PVE+V+ +Q
Sbjct: 348 KGPISPDPA-IMEEIDGLSNTLDDLILSLNDVDTAEPVENVDIDQ 391


>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 460 ARGHNGRVSHDHGGHQGHVTNVHWARGHNGGVSHDHRGYTRSLGNNY 320
           A GH   ++H H     H      A  H  G++H H   T+ L ++Y
Sbjct: 214 AHGHTKGLAHSHTKGLAHSHTKGLAHSHTKGLAHSH---TKGLAHSY 257


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 448  NGRVSHDHGG--HQGHVTNVHWARGHNGGVSHDHRGYTR 338
            +GR++   GG     H+++    RG  GGVS  H G+ R
Sbjct: 1059 HGRLTRGDGGGASSAHISHGRLTRGDGGGVSSAHIGHGR 1097


>SB_13265| Best HMM Match : IncA (HMM E-Value=0.32)
          Length = 339

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -2

Query: 390 GLGATMAGSATITGATLGPSATITGLGTMMAGSAMITGETAGFSSNL 250
           G+G +++G   + G  L   A + G+G + AG+ ++   + GF+S +
Sbjct: 202 GVGVSLSGIGVLIGGPLAGVAGLVGVGVVGAGAGVV---SRGFTSKV 245


>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -1

Query: 433 HDHGGHQGHVTNVHWA-RGHNGGVSHDHRGYTRSLGNNYRARYYDGRISNDHGRNSR 266
           H HGG +   T+ H   + H+    H HR +     + +      GR ++DH    R
Sbjct: 417 HGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHEMR 473


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,041,099
Number of Sequences: 59808
Number of extensions: 295364
Number of successful extensions: 1104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)