Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0806
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.35 
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   0.80 
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   1.8  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   3.2  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   3.2  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    25   4.3  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   4.3  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   4.3  
SPAC227.04 |||autophagy C terminal domain family protein|Schizos...    25   5.6  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    24   9.8  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    24   9.8  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    24   9.8  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    24   9.8  

>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 200 QINLFGREVGPAVNNFLERSLST*RTTQPRSAVFWSTSPNSSSTD 334
           ++NLF +++G + N+F  R+L T   ++  + +  S+S NS S D
Sbjct: 120 ELNLFAKKLGFSKNSFDARALDT--ESEDETEIEKSSSENSDSVD 162


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 0.80
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -1

Query: 133 EGDGSGSLSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 20
           EG     LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 160 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 41
           +  DN ++     SGS + D +  +  G+E+ +D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 333 SVDDELGDVLQNTADLGCVVRQVDRDLSRKL--LTAGPTSRPKRLIWR 196
           S+ D   DVL  T D G V+R +  D+   L  +T     R +R I++
Sbjct: 292 SILDHSLDVLSRTGDNGDVIRGISEDIDVCLSKITKTKNGRERREIYK 339


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 130 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 26
           G GSG L ND L+ K S    P     +NA  S  G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 26  SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 190
           S +GEI   + V  +  + G  L NVV EA   A     D +I SD+  AA  + D+K
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 216 PKRLIWRLDLTSPI 175
           PK LIWR  LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 163 SDVTDNDVVCEGDGSGSLSNDVLKGK-SSGSERPQDAAENADF 38
           SDV D +V+ E   +  +SN V + K  S  E   D A++  F
Sbjct: 404 SDVEDTEVIIEDQDNQEISNHVAEEKIDSDEEETIDDAKSEMF 446


>SPAC227.04 |||autophagy C terminal domain family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 214 RTRSWTSRQQLPREIPVYLTDYAAEVSRVLEYVAQLVI 327
           RTR +    Q+ +E P YL+ +   + +VL  + Q +I
Sbjct: 133 RTRDYFEMLQIDKEDPKYLSLWLLYIHQVLSPLTQPII 170


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 158 IGAAITIGDVKSNLQIN 208
           I + I  GD+K+NLQ+N
Sbjct: 79  IASKIVSGDLKTNLQVN 95


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 104 VAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFG 217
           V E   +  +  NII   IG  I  G   +NL I L+G
Sbjct: 579 VLEGITNQHVGLNIITELIGGYILPGKPLANLMIKLYG 616


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 276 LRSRGQPCSGVRRPTRHQQITVNYSNDTCESKINY 380
           + SRG     V   T    +  N ++ TCES+++Y
Sbjct: 312 MTSRGLAIKAVPGQTTADMMAWNGASTTCESQLDY 346


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 288 GQPCSGVRRPTRHQQITVNYSN 353
           G PCSG+    + +Q+T+++ +
Sbjct: 318 GGPCSGILNKNQCEQVTMDFDS 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,436,805
Number of Sequences: 5004
Number of extensions: 26269
Number of successful extensions: 110
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)