Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0806
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   1.3  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   1.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   3.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   5.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   9.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   9.0  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 123 EAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETL 4
           E V +  T   A+P +A+++  +L+   S +   T AET+
Sbjct: 164 EPVWAIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETV 203


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 333 ITVNYSNDTCESKINYVL 386
           I  N S D CE+ +N+++
Sbjct: 119 INANKSTDKCENGLNFII 136


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 117 VASATTFSRASPPEAKDLRTRLKMRISP 34
           +  +T+F R  PP A   R  L  R  P
Sbjct: 378 IGPSTSFPRFIPPNAYRFRPPLNPRFGP 405


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 294 PCSGVRRPTRHQQITVNYSNDTCESKINY 380
           P   ++   RH ++    + D C+ +INY
Sbjct: 200 PMPTLKGDGRHMEVIKIKNFDNCDQRINY 228


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 133 EGDGSGSLSNDVLKGKSSGSERP 65
           EG G  SL   + +G+ +G+E P
Sbjct: 731 EGSGGDSLRTLLQRGQETGAEWP 753


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 163 SCNNYW 180
           SCNNYW
Sbjct: 100 SCNNYW 105


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 309 VLQNTADLGCVVRQVDRDLSRKLLTAGPTSRPKRLI 202
           VL+   D+G V+  +    + ++L    + RPK L+
Sbjct: 2   VLRCIGDMGAVMTSLTLGPAGQVLAGSSSPRPKPLL 37


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 43  PHFQPRPEVF 72
           PH  P P+VF
Sbjct: 451 PHIYPNPDVF 460


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 112 GYRFRLPRRQHHCQ*HRSC 168
           GY++  P  Q H + H +C
Sbjct: 311 GYKYITPLIQKHLKIHDTC 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,416
Number of Sequences: 438
Number of extensions: 1672
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)