Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0806
(397 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 30 0.49
At3g13410.1 68416.m01686 expressed protein 29 1.1
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p... 29 1.1
At4g01960.1 68417.m00261 expressed protein 28 2.0
At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F, puta... 28 2.6
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill... 28 2.6
At5g15130.1 68418.m01773 WRKY family transcription factor contai... 27 3.4
At1g36730.1 68414.m04569 eukaryotic translation initiation facto... 27 3.4
At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR ... 27 4.5
At4g09790.1 68417.m01608 F-box family protein hypothetical prote... 27 6.0
At3g20660.1 68416.m02615 organic cation transporter family prote... 27 6.0
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic... 26 7.9
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family... 26 7.9
At1g41900.1 68414.m04840 myosin heavy chain-related similar to M... 26 7.9
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 30.3 bits (65), Expect = 0.49
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -1
Query: 211 EIDLEVRFDIANSY--CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 47
E +E DI N CS +D+ EG+ L N+ L+ +S+GS+ D A N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182
>At3g13410.1 68416.m01686 expressed protein
Length = 321
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 235 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 104
GWSNF E LE D+A + ++ +DV + + +L N
Sbjct: 70 GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113
>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
protein (GI:507127) [Streptococcus pyogenes]
Length = 509
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -2
Query: 249 RKLLTAGP-TSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 73
RK LTAG SRPK +R D++ +++ T + ++ EAV T + +
Sbjct: 130 RKTLTAGDIASRPKMETFR-DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSS 188
Query: 72 KDLRTRLKMRISPSAEPTD 16
L + S++ TD
Sbjct: 189 DSLAKNTSANVDFSSQKTD 207
>At4g01960.1 68417.m00261 expressed protein
Length = 236
Score = 28.3 bits (60), Expect = 2.0
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -1
Query: 220 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSS--GSERPQD 59
+ EE DL+V + + ++T N V EGD S ++ N V G+ S GSE+ D
Sbjct: 6 SGEEEDLDVDIEDGRFNETQEITTNLVSAEGD-SENVLNHVWSGRLSFDGSEKSAD 60
>At2g43810.1 68415.m05446 small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative
/ Sm protein F, putative similar to SWISS-PROT:Q9Y4Y8 U6
snRNA-associated Sm-like protein LSm6 [Mus musculus]
Length = 91
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 241 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSN 104
+DG+ N A E+ + V + N+Y + V N+V+ G+LS+
Sbjct: 44 LDGYMNIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYISTTKGTLSD 89
>At1g44120.1 68414.m05096 C2 domain-containing protein /
armadillo/beta-catenin repeat family protein similar to
CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
profiles PF00514: Armadillo/beta-catenin-like repeat,
PF00168: C2 domain
Length = 2114
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 169 CSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 50
CSS ++ VV EG+G ++ ++ + KS+ E D+ E
Sbjct: 990 CSSHPSNRLVVMEGNGLEIIAENLQRNKSNTQENSSDSEE 1029
>At5g15130.1 68418.m01773 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain; TMV
response-related gene product, Nicotiana tabacum,
EMBL:AB024510
Length = 548
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = -1
Query: 193 RFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENADFS 35
R I+N+ ++ T+N+ C G S L ++++ +G+ Q +++ FS
Sbjct: 475 RHSISNNIQQTNTTNNNKGCGGYFSSLLMSNIMASNQTGASLDQPSSQLPPFS 527
>At1g36730.1 68414.m04569 eukaryotic translation initiation factor
5, putative / eIF-5, putative similar to SP|P55876
Eukaryotic translation initiation factor 5 (eIF-5) {Zea
mays}; contains Pfam profiles PF02020:
eIF4-gamma/eIF5/eIF2-epsilon, PF01873: Domain found in
IF2B/IF5
Length = 439
Score = 27.5 bits (58), Expect = 3.4
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -1
Query: 220 ASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENAD 41
AS E EV I Y D+ D DV+ E G S+ VLK + E Q+A ++
Sbjct: 379 ASAEAAKEVALVIKGLY-DEDILDEDVIVEWYNKGVKSSPVLKNVTPFIEWLQNAESESE 437
>At4g33300.1 68417.m04737 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 816
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 327 DDELGDVLQNTADLGCVVRQVDRDLSRKLLTAGPTSRPKRLI 202
D LG + + D+ V RDL+ L AG +R KRL+
Sbjct: 470 DPRLGSLYASHYDIFVTQHDVLRDLALHLSNAGKVNRRKRLL 511
>At4g09790.1 68417.m01608 F-box family protein hypothetical protein
-Arabidopsis thaliana;PID:g2245079; contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 351
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 306 VRRPTRHQQITVNYSNDTCESKI 374
+ RP R +Q+ V Y DTC +I
Sbjct: 207 MERPVREEQLAVLYQQDTCLMEI 229
>At3g20660.1 68416.m02615 organic cation transporter family protein
similar to organic cation transporter OCT3 [Rattus
norvegicus] GI:3273722, organic cation transporter 3
[Mus musculus] GI:4454795; contains Pfam profile
PF00083: major facilitator superfamily protein
Length = 534
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/31 (29%), Positives = 22/31 (70%)
Frame = +2
Query: 122 SVSLADNIIVSDIGAAITIGDVKSNLQINLF 214
SV+++ + + G ++ +G++K+NL +N+F
Sbjct: 342 SVAISFTVSIVYYGLSLNVGNLKTNLYLNVF 372
>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
to receptor kinase (CLV1) GB:AAB58929 GI:2160756
[Arabidopsis thaliana]
Length = 980
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 56 RVLRSFASGGLALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQI--NLFGREVG 229
R++++ +G + + L DN ++ ++ GDV + + N F E+
Sbjct: 415 RIVKNLLNGTVPAGLFNLPLVTIIELTDNFFSGELPVTMS-GDVLDQIYLSNNWFSGEIP 473
Query: 230 PAVNNF 247
PA+ NF
Sbjct: 474 PAIGNF 479
>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1338
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -1
Query: 241 VDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVV-CEGDGSGSLSND 101
+D S ++LE+ +D +++T ND C DG+ ++ D
Sbjct: 1148 IDDCSTTGDAAVELEITYDEKLDRVVTEITGNDAAECMTDGNRDIATD 1195
>At1g41900.1 68414.m04840 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 442
Score = 26.2 bits (55), Expect = 7.9
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -2
Query: 231 GPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKD 67
G S PKR + ++ S +A+P M + EA ASA RA P D
Sbjct: 302 GAPSSPKRARTQPEVVSDQRVASPREERMEPATATPEAAASAIGDPRAGPMAEDD 356
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,578,421
Number of Sequences: 28952
Number of extensions: 143384
Number of successful extensions: 508
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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