Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0802
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    26   3.7  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.9  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   8.5  

>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 6   IRLDKPKNENYHCLFCHSCR 65
           I LD    + +HC  CH+CR
Sbjct: 122 IELDTKYFDIFHCRVCHTCR 141


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 15  DKPKNENYHCLFCHSCRCG 71
           D P   +YHC  C  CR G
Sbjct: 217 DDPNKSSYHCDDCGICRIG 235


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -3

Query: 500 FKQTIIFDQSNSSDSVQLFGKNHSRFRDNREDW 402
           FK+  +F  +     +   G NH+R+R +++++
Sbjct: 852 FKKNQVFFGNYEDSKLSFIGSNHTRYRIDKDEF 884


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,447
Number of Sequences: 5004
Number of extensions: 24976
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)