Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0802
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0398 - 2858863-2859501,2859616-2859714,2859757-2859821,285...    29   3.7  
02_02_0641 + 12566416-12566599,12567132-12567327,12568319-125684...    28   6.5  
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164...    28   6.5  
06_03_0071 - 16212450-16212782                                         27   8.7  
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799...    27   8.7  

>06_01_0398 -
           2858863-2859501,2859616-2859714,2859757-2859821,
           2859927-2860256,2860377-2860398
          Length = 384

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 168 RNRVHWGRHVDWGQCGRVDV 109
           R+R HW  H+D G CG +D+
Sbjct: 227 RSRFHW--HIDTGHCGAIDL 244


>02_02_0641 +
           12566416-12566599,12567132-12567327,12568319-12568406,
           12569279-12569330,12569423-12569765,12571282-12571684,
           12571770-12571841,12572632-12572817,12573174-12573239,
           12574802-12575174,12575917-12576014,12578179-12578305,
           12578734-12578924,12579265-12579540,12579837-12579866
          Length = 894

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 231 GGRLNWSRDGIDWDGNGVNRGRNRVHWGRHVDWGQCG 121
           G RL W   G DW G   + G  R+  G  V WG  G
Sbjct: 99  GRRLVWC-SGRDWHGVRHSWGMGRLGGGGSVSWGGAG 134


>01_07_0303 +
           42615578-42615709,42616273-42616312,42616393-42616477,
           42616634-42616813,42618274-42618354,42618890-42619011,
           42619867-42620723,42621656-42621897,42622107-42622200,
           42622306-42622476,42622695-42622740,42624101-42624111,
           42624141-42624392
          Length = 770

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -3

Query: 443 GKNHSRFRDNREDWFGQDHGLW*HDAG*RRLRQDHGLWYHDTG*RR-LRQDHGLWSDDA- 270
           G N ++FRD    W G D GLW    G         L Y      +  R DH L+S +A 
Sbjct: 328 GLNSNQFRDPTTGWIGPD-GLWRIAVGAELNGYSAALLYKSKDFMQWTRVDHPLYSSNAS 386

Query: 269 --WE 264
             WE
Sbjct: 387 NMWE 390


>06_03_0071 - 16212450-16212782
          Length = 110

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 303 PAGSRAXER*RLGEPVR*NNRFGFGGRLNWSR 208
           P+G R  ER RLGE V        GG   W+R
Sbjct: 73  PSGGRRWERRRLGEKVEEAGVRSTGGEEEWAR 104


>01_06_1440 +
           37378121-37378958,37379344-37379494,37379567-37379936,
           37380021-37380431,37380522-37380820,37380897-37381155,
           37381248-37381497,37381744-37381875,37381936-37382208,
           37383023-37383267
          Length = 1075

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = -2

Query: 288 AXER*RLGEPVR*NNRFGFGGRLNWSRDGIDWDGNGVNRGRNRVH 154
           A ER  +G PV  +  +G G    W  DG         RGR   H
Sbjct: 551 AAERFAIGRPVVDSAPYGVGRSAQWPEDGPTMGTYWCRRGRRYAH 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,581,880
Number of Sequences: 37544
Number of extensions: 185781
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)