Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0802
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1363| Best HMM Match : Chorion_3 (HMM E-Value=2.9)                  29   3.8  
SB_43636| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-31)                 29   3.8  
SB_16621| Best HMM Match : TSP_1 (HMM E-Value=1.9e-11)                 27   8.8  

>SB_1363| Best HMM Match : Chorion_3 (HMM E-Value=2.9)
          Length = 624

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 PQTRTGYFTEPVLPGVIAPXPVILPEP 308
           P   T  F  PV+ G++ P  V++P+P
Sbjct: 47  PPLLTSLFAMPVMSGLVHPSTVVIPDP 73


>SB_43636| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-31)
          Length = 355

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 582 PELIVNGSCLYSHFSVIMLVISITYIKI 499
           P L V   C+Y + S  MLV+++ YIKI
Sbjct: 180 PNLKVASLCVYLNCSCSMLVLTVCYIKI 207


>SB_16621| Best HMM Match : TSP_1 (HMM E-Value=1.9e-11)
          Length = 84

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 156 HWGRHVDWGQCGR 118
           HWGR   WG+C R
Sbjct: 6   HWGRWAAWGKCSR 18


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,327,829
Number of Sequences: 59808
Number of extensions: 218880
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)