Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0802
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24620.1 68418.m02908 thaumatin-like protein, putative simila...    29   2.4  
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ...    27   7.2  
At3g52600.1 68416.m05794 beta-fructosidase, putative / beta-fruc...    27   9.6  

>At5g24620.1 68418.m02908 thaumatin-like protein, putative similar
           to thaumatin-like protein [Arabidopsis thaliana]
           GI:2435406; contains Pfam profile PF00314: Thaumatin
           family
          Length = 420

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 270 LGEPVR*NNRFGFGGRLNWSRDGIDWDGNGVNR 172
           +G+ VR     G+ GR+ W+R G ++D NG  +
Sbjct: 59  VGQSVRIPTALGWSGRI-WARTGCNFDANGAGK 90


>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
           XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
          Length = 1020

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 353 LRQDHGLWYHDTG*RRLRQDHGLWSDDAWENRFGK 249
           L+    LW+ D G R +  +HG+ ++    N  G+
Sbjct: 813 LKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGR 847


>At3g52600.1 68416.m05794 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase [Daucus carota] GI:18324
          Length = 590

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 443 GKNHSRFRDNREDWFGQDHGLW 378
           G+N S FRD    WF +  G W
Sbjct: 178 GENGSAFRDPTTAWFNKKDGYW 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,186,338
Number of Sequences: 28952
Number of extensions: 141629
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)