Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0800
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.1  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   7.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   9.4  

>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 249 GNTKLRLFICLFSICSVLLFIYIRMRRQIY 160
           GNTKLR F+ L  + +V L +     R +Y
Sbjct: 67  GNTKLRTFVLLILVSAVFLTLIEFPCRNVY 96


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 189 IYIRMRRQIYFR*LSQHPHFLFITALYHIKSDIVICI 79
           +++R+ R+I +  L +HPH + +  +    +DIV+ I
Sbjct: 75  MHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 111


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -2

Query: 771 FVCRSCTILRNG*TNFDKVSNFLYSCITVCTI-----LQKCTIFG 652
           F C +CTI+  G  N   +SN   + + V T+     + KC+ FG
Sbjct: 430 FGCSNCTIIIKGKLNTVSMSNCKRTSVVVDTLVAAFDIAKCSNFG 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,332,180
Number of Sequences: 5004
Number of extensions: 69281
Number of successful extensions: 174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)