Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0800
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)                 30   2.5  
SB_24562| Best HMM Match : Ribosomal_L32p (HMM E-Value=4.9)            28   7.6  

>SB_58212| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-38)
          Length = 352

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = -3

Query: 725 SIRYPI---FYIPVLQCVQYYKSVRYSAKI*RC*LYWCH*KRKRGWRFAHK-NWRYISLM 558
           ++RYPI   +   V+  +  +   +YSAK   C L W +      W+      W  ++++
Sbjct: 140 NLRYPIGIMWSFSVIYVIPLFVYEKYSAKENNCSLVWPN------WQVTGMIYWGVLAVI 193

Query: 557 FISTAATSLHCYIIVLFLIFFYC*TCGR 474
            +  + T L+CY  ++  ++F    C R
Sbjct: 194 VLLCSITMLYCYFNIIKGLYFTQTICSR 221


>SB_24562| Best HMM Match : Ribosomal_L32p (HMM E-Value=4.9)
          Length = 288

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 273 FFK*KLLRHCFAAKVTIIHK 332
           FF  KL+R+CF   VT++HK
Sbjct: 12  FFCMKLVRNCFIIHVTVLHK 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,177,867
Number of Sequences: 59808
Number of extensions: 472891
Number of successful extensions: 1259
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)