Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0800
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.46 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.3  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   7.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   10.0 

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 320 CDFCSKTVSKKFSLKK 273
           CD C KT+S K +LK+
Sbjct: 374 CDVCGKTLSTKLTLKR 389


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -1

Query: 718 GIQFFIFLYYSVYNITKVYDIRLRFEDANYTGVTKRGNAGGVLPIKIGDT 569
           G   F+F     + + KV D+R + E    T +  R  +   + I+ G +
Sbjct: 268 GCMMFVFAALGEFVVVKVLDLRSQLEYDLQTSIMSRHYSTRAIVIEKGQS 317


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 188 MNNRTEHIENRQMKSLSFVFPFLDQN 265
           +NN      +RQ+   + + PF+ QN
Sbjct: 61  LNNHCNRCTSRQIGIANTLIPFMQQN 86


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 266 NFGPETGIRNLDFSFAYFQYVLFC 195
           NFGP + +R   F+     Y  FC
Sbjct: 597 NFGPLSNVRFAVFALGSSAYPNFC 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,026
Number of Sequences: 438
Number of extensions: 5306
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)