Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0800
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01100.1 68416.m00015 early-responsive to dehydration protein...    29   2.7  
At2g05370.1 68415.m00565 expressed protein similar to SGS2 (GI:8...    28   6.2  

>At3g01100.1 68416.m00015 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 703

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 582 KLEIHFTNVYIYSCYVFTLLYY 517
           KL IHF  +YI++  V +LLYY
Sbjct: 145 KLWIHFCAIYIFTAVVCSLLYY 166


>At2g05370.1 68415.m00565 expressed protein similar to SGS2
           (GI:8164028) [Arabidopsis thaliana]; similar to
           RNA-dependent RNA polymerase (GI:8248473) [Arabidopsis
           thaliana]
          Length = 211

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 151 TFSAPAFPLYNRVVPYKE*HCDLYFTL 71
           T + P F  Y RVVP+   HCD + +L
Sbjct: 58  TSNIPKFDCYERVVPHAFVHCDAHKSL 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,737,035
Number of Sequences: 28952
Number of extensions: 328100
Number of successful extensions: 797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)