Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0799
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    32   0.51 
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    31   0.67 
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155...    31   1.2  
07_01_0672 - 5041742-5043175                                           30   2.0  
03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911...    29   2.7  
03_06_0035 - 31201115-31203646                                         28   8.3  

>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 506 RGSGVNKNGLGVAIGHIDFFVNGRLVQPGCTNNLCSHNRAYEVFAAT 646
           RG  ++   +G  +GH+ +  +G+    GC   + S   A E  AA+
Sbjct: 319 RGGAIHHGAVGALLGHLSWAASGKCASGGCAGAVPSALAAVEALAAS 365


>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 261 AVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 413
           A +A   +   IA +LKN KL ++++ +    L   +A +    + GK+ +
Sbjct: 405 AKLAANWIMGDIAAYLKNEKLSIDEIKLTPLELSELIASIRNGTISGKIGK 455


>05_04_0226 +
           19215091-19215172,19215281-19215394,19215508-19215590,
           19215682-19215820,19215862-19216191,19216414-19216693,
           19216795-19216956,19217134-19217349,19217458-19217495,
           19217597-19217760,19217833-19217946,19218042-19218083,
           19218180-19218983
          Length = 855

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 165 RRRSSATVTVYYYDNIPIIVKARSSIVSSGKVVFGECNRISL 40
           R R S   T+   +NIP+++   SS   + K V G+  R+SL
Sbjct: 637 RLRLSKAPTIQNKENIPVMLNKGSSGADTSKAVAGKARRVSL 678


>07_01_0672 - 5041742-5043175
          Length = 477

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +1

Query: 37  AQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNV 216
           A++  I    D F  G D  AR    W    ++HG  GT  +T+   + +      DY++
Sbjct: 217 AKKKDIMDDLDAFRDGKDYYARIGKAWKRGYLLHGPPGTGKSTMIAAMANYL----DYDI 272

Query: 217 IVVDWSSFSLSTYQRQ 264
             V+ +S + +T  R+
Sbjct: 273 YDVELTSVATNTDLRR 288


>03_02_0523 +
           9112577-9112608,9112626-9113251,9113696-9113747,
           9114713-9114782
          Length = 259

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/63 (17%), Positives = 31/63 (49%)
 Frame = +1

Query: 34  NAQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYN 213
           ++  +S  ++ D F +      +  ++WD+  + + H G      +  +++A+   G Y+
Sbjct: 117 SSSSSSNNISSDAFTSSRSNGTKDTDSWDMQHLEYDHPGLMLLPYDDDIEEAYDVLGQYD 176

Query: 214 VIV 222
           V++
Sbjct: 177 VVM 179


>03_06_0035 - 31201115-31203646
          Length = 843

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +1

Query: 52  ITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFL-TSGD 207
           + + +DH+   N T A F+ + D +V++H  S  AT   NP++++  + T GD
Sbjct: 125 LPIPDDHY---NLTTATFSVSTDDMVLLHDFSFIATPP-NPVLREYIVATQGD 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,239,513
Number of Sequences: 37544
Number of extensions: 376852
Number of successful extensions: 947
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)