Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0799
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      58   9e-09
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            56   4e-08
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   2e-07
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  47   1e-05
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)                  37   0.018
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)           29   4.8  
SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)                   28   6.4  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   8.4  
SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)                     28   8.4  
SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9)                28   8.4  
SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 6/63 (9%)
 Frame = +3

Query: 336 VHIVGFNLGAHVAGVTGRNLEGK---VARITGLDPSARDW---ENNVLRLGTNDAQYVEV 497
           VH++GF+ GAHVAG  GR ++ +   + RIT LDP+A  W    +  +RL T+DA +V+V
Sbjct: 191 VHVIGFSFGAHVAGYVGRRMKKRGRMIDRITALDPAAM-WFHKHHEDVRLDTSDALFVDV 249

Query: 498 IHT 506
           IHT
Sbjct: 250 IHT 252



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
 Frame = +2

Query: 530 GLGVAIGHIDFFVNGRLVQPGCTN--------NLCSHNRAYEVFAATI-THGKHYGNQCS 682
           G+   IGH DF+ NG   QPGC N          C H RA  +F  ++ T    Y   C 
Sbjct: 257 GITSTIGHADFYPNGGKKQPGCDNFFRGFSSYLFCGHKRAPALFTTSLYTKTPLYSYPCR 316

Query: 683 TE 688
           +E
Sbjct: 317 SE 318



 Score = 35.9 bits (79), Expect = 0.032
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
 Frame = +1

Query: 103 FNNNWDIVVIIHGHSG-TATTTINPIV-------KDAFLTSGDYNVIVVDW 231
           FN +   V+IIHG +G T  T+I   V       K+  L  GD+NVI+VDW
Sbjct: 101 FNASRRTVIIIHGFAGFTTLTSIRHEVNWWGFPMKNELLWEGDFNVIIVDW 151


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 10/85 (11%)
 Frame = +3

Query: 282 VGSSIATFLKN-LKLPLNK----VHIVGFNLGAHVAGVTGRNLE--GK-VARITGLDPSA 437
           VG+ +A F+K  L L  ++     H +GF+LGAH++G  G+ L+  G+ + RITGLDP+ 
Sbjct: 150 VGAQVAAFMKTILSLSGSREGGAFHSIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPAT 209

Query: 438 RDWENNV--LRLGTNDAQYVEVIHT 506
             ++     +RL   DAQ+V+VIHT
Sbjct: 210 LMFKGEAPDVRLDRLDAQFVDVIHT 234


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 28/62 (45%), Positives = 45/62 (72%), Gaps = 5/62 (8%)
 Frame = +3

Query: 339 HIVGFNLGAHVAGVTGRNLE---GKVARITGLDPSARDWEN-NV-LRLGTNDAQYVEVIH 503
           ++VGF+LGAH++G  GR +     K+ RITGLDP++  + N +V +RL  +DA +V+V+H
Sbjct: 690 YLVGFSLGAHISGYVGRRIAKTGQKLNRITGLDPASIHFVNAHVDVRLDPSDADFVDVMH 749

Query: 504 TE 509
           T+
Sbjct: 750 TD 751



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
 Frame = +2

Query: 530 GLGVAIGHIDFFVNGRLVQPGCTNNL--------CSHNRAYEVFAATIT 652
           G     GHIDF+ NG   QPGC + L        C H RA E +A ++T
Sbjct: 756 GTPTVSGHIDFYPNGGKKQPGCRDLLDGPINYVICDHMRAPEYYAESVT 804


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = +3

Query: 294 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARIT 419
           I T  +     L +VH++G +LGAHVAG  G  L GKV RIT
Sbjct: 89  ITTIQRVFDFDLRRVHLIGHSLGAHVAGYAGERLSGKVGRIT 130



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 85  NDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSS 237
           N TA  F  +  +V+IIHG   +   +   +++D  L     NVI VDW S
Sbjct: 15  NSTA--FRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQS 63


>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
          Length = 408

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
 Frame = +2

Query: 530 GLGVAIGHIDFFVNGRLVQPGC-------TNNL-CSHNRAYEVFAATIT 652
           G     GHIDF+ NG   QPGC       +N L C H RA++ F  +IT
Sbjct: 37  GTSTQSGHIDFYPNGGKNQPGCRDIADGPSNALKCDHVRAHDYFTESIT 85


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +3

Query: 192 FNKWRL*RYRCGLVIIQFINIST--AVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGA 365
           +  WR  +     V I F+ +    + +A+T +   + +FL  + +   K H+ G ++G 
Sbjct: 85  YETWRTKKDFLAKVNIVFVELKLRKSSLAITII-YPLLSFLHAVGVNKRKFHLAGISMGG 143

Query: 366 HVAGVTGRNLEGKVARITGLDPS 434
           H+ GV       +VA +  + P+
Sbjct: 144 HIVGVYAAQHPARVASVIMMCPA 166


>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 94  AARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDW 231
           A+ ++      VI HG++ + +T+    ++ A L   D NV++ DW
Sbjct: 95  ASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKDDVNVVITDW 140


>SB_5209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = +3

Query: 342 IVGFNLGAHVAGVTG---RNLEG-KVARITG 422
           ++GF+LG HVAG  G   +N  G K+ RI+G
Sbjct: 21  VIGFSLGGHVAGYAGSRIKNTTGLKLGRISG 51


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 557  DFFVNGRLVQPGCTNNLCSHNRAYEVFAATITHGKHYGNQCSTEA 691
            D++   ++   G T+  C     YE      T GK YGN+C   A
Sbjct: 1278 DYYAQCQVEDDGSTSCKCPIFCTYEYMPVCGTDGKTYGNKCEMRA 1322


>SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 524 KNGLGVAIG---HIDFFVNGRLVQPGCTNNLCSHNRA 625
           K+  G+ IG   H+D  VNG  VQ       C+HN+A
Sbjct: 12  KSSEGMYIGADLHLDKDVNGAYVQGSFIGGFCTHNKA 48


>SB_22961| Best HMM Match : Abhydrolase_1 (HMM E-Value=0.043)
          Length = 183

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 303 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS 434
           FL  + +   K H+ G ++G H+ GV       +VA +  + P+
Sbjct: 1   FLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASVIMMCPA 44


>SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 178 VKDAFLTSGDYNVIVVDW 231
           +K+  L  GD+NVI+VDW
Sbjct: 19  MKNELLWEGDFNVIIVDW 36


>SB_53077| Best HMM Match : SRP54_N (HMM E-Value=1.8)
          Length = 533

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 442 IGKTTYYDWEQTMLNTLKLFTPRIWCQQKRLGRCY 546
           +   T Y    TM   +K   P +W   KR+G CY
Sbjct: 234 VNPLTQYHRVVTMEKFMKTIAPSVWPPGKRIGFCY 268


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 133 IHGHSGTATTTINPIVKDAFLTSGDYNV 216
           + G   T TTT N ++K A L +GDY V
Sbjct: 58  VTGPRNTITTTKNALIKAASLKAGDYFV 85


>SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)
          Length = 442

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 428 PFGS*LGKQRTTTGNKRCSIR*SYSHRGSGVNKNGLGVAIGHIDFFVNGRLVQ-PGCTN 601
           P  S L + RT +     S++ + +  G   N +GLG+   H DF    + +Q  GCT+
Sbjct: 302 PDSSKLLRSRTMSYRIDTSLKFTIAETGDPSNGDGLGLTTSHFDFSNPKQSLQCSGCTS 360


>SB_40325| Best HMM Match : Herpes_US9 (HMM E-Value=1.9)
          Length = 227

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +3

Query: 252 ISTAVMAVTGVGSSIATFLKNLKLPLNKVH-IVGFNLGAHVAGVTGRNLEGKVARITGLD 428
           I+   ++  GVG S++     +  PL  V  +VG  +    AGV  R L  KVA+     
Sbjct: 58  IAAGALSSAGVGVSLSGIRVLIGGPLAGVAGLVGVGVVGAGAGVVSRGLTSKVAKHEDTM 117

Query: 429 PSARDWENNVLRLGTND 479
             A   +N++  L   D
Sbjct: 118 VLAESKKNSISELALQD 134


>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 3   WKFK*ILLL*QCTEKFDYTHR 65
           +K+  I LL  C+EKFDY HR
Sbjct: 435 FKWDHIYLLDSCSEKFDYFHR 455


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,613,670
Number of Sequences: 59808
Number of extensions: 453874
Number of successful extensions: 1080
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)