Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0799
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f... 33 0.18
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.42
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f... 32 0.42
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai... 29 3.9
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /... 29 3.9
At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-... 28 5.2
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 28 6.9
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit... 28 6.9
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 28 6.9
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop... 28 6.9
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop... 28 6.9
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop... 28 6.9
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 27 9.1
>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 475
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 267 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITG 422
+A + S IA +LKN KL +N + + L +A + + GK+ + G
Sbjct: 413 LAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGKEVG 464
>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 488
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 267 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 413
+A + S IA +LKN KL +N + + L +A + + GK+ +
Sbjct: 413 LAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461
>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
family protein contains Pfam profiles: PF02934 PET112
family, N terminal region, PF02637 GatB/Yqey domain,
PF01162 PET112 family, C terminal region
Length = 550
Score = 31.9 bits (69), Expect = 0.42
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +3
Query: 267 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 413
+A + S IA +LKN KL +N + + L +A + + GK+ +
Sbjct: 413 LAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDGTISGKIGK 461
>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 1009
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 169 NPIVKDAFLTSGDYNVIVVDWSSFSL 246
NP + DAF+ +GDY+ +VV F L
Sbjct: 901 NPRIHDAFMGAGDYSGLVVPDGKFGL 926
>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
gibberellin-responsive modulator identical to GB:Y11336,
member of SCARECROW family
Length = 587
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 411 RITGLDPSARDWENNVLRLGTNDAQYVEVIHTE 509
R+TG+ P A D +++ +G AQ E IH E
Sbjct: 354 RLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVE 386
>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Mus musculus] GI:5410255; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 635
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +3
Query: 234 IIQFINISTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVA 410
II+ IN+S A + T + A L+N N V N AG TG NL GK+A
Sbjct: 520 IIREINLSNATSSRTAAVA--APHLRNYTGLRNNFQPVQLNPQPPAAGDTGNNLVGKLA 576
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 129 NNTRSQWHCYDDDQPYC*RRIFNKWR---L*RYRC 224
NNTRS+ C+ D+ C ++ KW+ YRC
Sbjct: 614 NNTRSRPFCHHHDEDRCPYKVIFKWQDMTFCSYRC 648
>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
GI:9937505; contains Pfam profiles PF00240: Ubiquitin
family, PF00627: UBA/TS-N domain
Length = 551
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +2
Query: 404 SSKNYGSRPFGS*LGKQRTTTGNKRCSIR*SYSHRGSGV--NKNGLGVAIGHIDFFVNGR 577
+ N GS PF + LG Q TT S S + G+G N N L G G+
Sbjct: 278 AGNNTGSNPFAALLGNQGVTTQGSDASNNSSTPNAGTGTIPNANPLPNPWG----ATGGQ 333
Query: 578 LVQPGCTN 601
PG TN
Sbjct: 334 TTAPGRTN 341
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 129 NNTRSQWHCYDDDQPYC*RRIFNKWR 206
NNTRS+ C+ D+ C ++ KW+
Sbjct: 622 NNTRSRPFCHHHDEDRCPHKVVFKWQ 647
>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 433
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 584 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 694
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 511
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 584 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 694
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
chlorophyll b synthase identical to chlorophyll a
oxygenase GI:5853117 from [Arabidopsis thaliana];
contains Pfam PF00355 Rieske [2Fe-2S] domain
Length = 536
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 584 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 694
+PGC N C+H RA + T+ G+ ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 632 VFAATITHGKHYGNQCSTEAEI 697
+F TI YG++C+TEAEI
Sbjct: 1111 LFGTTIYENIAYGHECATEAEI 1132
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,825,017
Number of Sequences: 28952
Number of extensions: 305327
Number of successful extensions: 704
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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