Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0797
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   3.5  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    27   3.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.7  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   6.2  

>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 667 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 560
           +H+  +  H S+Y R+R   PG N      QS   H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 371  WHVLLVRCSHPCRNSPQRIRDG*QQSEHKIFHRAHCDGKSSDN-ATVCRIV 222
            W +LLV  +  C NS   +R+G  Q   +IF+ + C    ++  A+ C++V
Sbjct: 1024 WIMLLVHLADLCENSWASVRNGAAQILFRIFN-SQCSKLGTNAWASCCQLV 1073


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 432 RVFLLICSDGELPFKAAVYLTATSTSRTHCDQ-QRKLQGTVQ 554
           RVF+++  +GE P     + T T  +R +CD    +L+  +Q
Sbjct: 3   RVFIVV-KEGEDPTSLVFHFTGTPNARENCDMITNELRNAIQ 43


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 189 LSTATCFHGEFYD-PAYRRIIAGLPVAVSPV 278
           +ST    +G +Y  PA    +AG P+A++PV
Sbjct: 213 VSTIVSQNGTYYSIPAVNHPMAGQPIAIAPV 243


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +2

Query: 206 FPWRILRSCIPSHYRWTSRRSEPGEISYVHFAVNHPEFSEENYDKDVS 349
           +PW    S  P  Y WT         SY+H + + P  +  N+   +S
Sbjct: 108 WPWHHNSSSNPQGYAWTPSLLSSNATSYLH-SGSSPHGNTSNHPSPIS 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,554
Number of Sequences: 5004
Number of extensions: 71158
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)