Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0793
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce... 131 1e-31
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|... 36 0.005
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 27 1.9
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.5
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 27 3.3
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 27 3.3
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.6
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 7.6
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 25 10.0
>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 192
Score = 131 bits (316), Expect = 1e-31
Identities = 56/85 (65%), Positives = 70/85 (82%)
Frame = +3
Query: 255 EVPQTSSALFFQYNMQLGPPYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIPYITDCV 434
E+PQ +S LFFQ+N LGPPYHV+IDTNFINF ++ K+D+ + +M CLYAK IP I+DCV
Sbjct: 45 EIPQMASNLFFQFNESLGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCV 104
Query: 435 LGELEKLGRKYRVALRIIKDPRFER 509
+ ELEKLG +YR+ALRI KD RFER
Sbjct: 105 MAELEKLGIRYRIALRIAKDERFER 129
Score = 76.6 bits (180), Expect = 3e-15
Identities = 31/39 (79%), Positives = 36/39 (92%)
Frame = +2
Query: 509 IACLHKGTYADDCLVQRVTQHKCYIVATNDKDLKRRIRK 625
+ C HKGTYADDC+VQRV QHKCY+VATNDK+LK+RIRK
Sbjct: 130 LPCTHKGTYADDCIVQRVMQHKCYLVATNDKNLKQRIRK 168
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 622 KIPGVPIMYVAEHKYTI 672
KIPG+PI+ VA HK +
Sbjct: 168 KIPGIPILSVANHKIRV 184
>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 35.9 bits (79), Expect = 0.005
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 279 LFFQYNMQLG--PPYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIPYITDCVLGELEK 452
L Y + G PY VL+D +F+ + K+DI + + P IT C + +L
Sbjct: 12 LMHTYQLLFGFREPYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCIRQLYS 71
Query: 453 LGRKYRVALRIIKDPRFER 509
+ + +RI K FER
Sbjct: 72 KSDELKQEIRIAKS--FER 88
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 306 LAACCIGRIVRNLFVGLPYFNYMRIYRFLLLWF 208
++ CC + LF+ +PYF + LLWF
Sbjct: 55 ISLCCDFPLFNFLFIAIPYFTEILYNDSSLLWF 87
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 106 GKQRKTRKIVEKRFAKMKKMINPSDSR 186
G +RK++ KR AK M+ SD+R
Sbjct: 135 GPLSNSRKLIPKRSAKFSSMVGSSDTR 161
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 461 SSKFFQFSKDTISNIWYAFSIKTIHH 384
S FF FS+D Y F IKTIHH
Sbjct: 364 SGSFFYFSRD------YRFIIKTIHH 383
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 628 VFSNSSFQIFVIGSYNITFMLCNSLY*TIISI 533
VFS F I + S ++ F+ C+S TII+I
Sbjct: 542 VFSRQGFPISIHRSKHLPFVACSSFQDTIITI 573
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -3
Query: 666 ILVFRNIHYRHTWYFLILRFKSLSLVATI 580
I++F N+ TW L F SLSLVATI
Sbjct: 476 IIMFDNM--TTTWAMATLAFISLSLVATI 502
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +3
Query: 285 FQYNMQLGPPYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIPYITDCV 434
FQ + ++ PPY ++ + I+ L + +C + C+P +T C+
Sbjct: 33 FQNSTKISPPYSENVE-GYPKVKIEKSLPYKYD--NCKLSICVPIVTTCI 79
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 435 LGELEKLGRKYRVALRIIKD 494
L E+EKLG K ++ L+ +KD
Sbjct: 28 LKEVEKLGSKKQIVLQTVKD 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,459
Number of Sequences: 5004
Number of extensions: 60639
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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