Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0793
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0419 - 2990827-2990834,2991432-2991510,2991594-2991650,299... 136 2e-32
02_03_0164 - 15862166-15862366,15862443-15862508,15862754-158630... 33 0.28
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214... 31 0.84
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33... 29 3.4
01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20... 29 3.4
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 28 5.9
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357... 28 5.9
03_01_0294 + 2260548-2260959,2261098-2261432,2261493-2261531 28 5.9
>06_01_0419 -
2990827-2990834,2991432-2991510,2991594-2991650,
2992307-2992394,2992626-2992698,2993020-2993089,
2993824-2993929,2994027-2994092,2994175-2994248
Length = 206
Score = 136 bits (328), Expect = 2e-32
Identities = 65/93 (69%), Positives = 73/93 (78%), Gaps = 9/93 (9%)
Frame = +3
Query: 258 VPQTSSALFFQYNMQLGPPYHVLIDTNFINFSIKNKL---------DIIQNMMDCLYAKC 410
VPQ SSALFF YN LGPPY V++DTNFINFSI+NKL D+ + MMDCLYAKC
Sbjct: 47 VPQVSSALFFSYNTALGPPYRVIVDTNFINFSIQNKLNASLTPMQLDLEKGMMDCLYAKC 106
Query: 411 IPYITDCVLGELEKLGRKYRVALRIIKDPRFER 509
P ITDCV+ ELEKLG+KYRVALRI KDPRF+R
Sbjct: 107 TPCITDCVMAELEKLGQKYRVALRIAKDPRFQR 139
Score = 80.2 bits (189), Expect = 1e-15
Identities = 34/44 (77%), Positives = 38/44 (86%)
Frame = +2
Query: 494 PTI*EIACLHKGTYADDCLVQRVTQHKCYIVATNDKDLKRRIRK 625
P +AC HKGTYADDC+V+RVTQHKCYIVAT D+DLKRRIRK
Sbjct: 135 PRFQRLACTHKGTYADDCIVERVTQHKCYIVATCDRDLKRRIRK 178
Score = 33.5 bits (73), Expect = 0.16
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 622 KIPGVPIMYVAEHKYTI 672
K+PGVPIMY+ H+Y+I
Sbjct: 178 KVPGVPIMYITRHRYSI 194
>02_03_0164 -
15862166-15862366,15862443-15862508,15862754-15863029,
15864869-15864989,15865091-15865368
Length = 313
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 312 PYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIP---YITDCVLGELEKLGRKY 467
PY VL+D F++ + + L + + L + P + + CVL EL +LG+ +
Sbjct: 25 PYRVLVDGTFVHHLLSHSLLPADDALQSLLSASRPPPLFTSKCVLAELRRLGKSH 79
>11_06_0553 -
24920428-24921057,24921149-24921276,24921372-24921409,
24921522-24921734,24921906-24921998,24922089-24922276,
24922396-24922502,24922614-24922775,24922870-24922953,
24923060-24923168,24923340-24923468,24923504-24923556,
24923654-24923759,24924082-24924189
Length = 715
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 247 KIRKSHKQVPHYSSNTTCS*DRH 315
K R SH VPH+ S T CS RH
Sbjct: 588 KSRASHGSVPHFMSPTVCSRQRH 610
>07_01_0042 -
334417-334431,334563-334688,334852-335136,335220-335368,
336239-336536,337030-337131,337245-337613,337973-338115,
338334-338518,339246-339475,339734-339821,340158-340253,
340397-340512,340604-340852,340950-341175,341411-341622
Length = 962
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = -2
Query: 511 YLSNRGSLIILKATLYFLPSFSNSPRTQSVIYGMHL 404
Y+S+ GSL +L A+ F+PS S R +++I G+H+
Sbjct: 707 YVSSVGSLTLLLASYSFVPS-KLSRRKRAIIGGLHV 741
>01_01_0027 -
205450-206029,206706-207276,207408-207836,208438-208525
Length = 555
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 263 TNKFRTILPIQHAARTAISCTN*HKLHQLLNKEQT*YH 376
TN T++ HAA TA C++ H L ++N E YH
Sbjct: 141 TNDACTLVTNTHAALTAKRCSDSHGLICMINHEDRCYH 178
>08_02_0095 - 12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 109 KQRKTRKIVEKRFAKMKKMINPSDSRIKNSERSEPKK 219
K ++ R+IVEK KK I + +N ++ PK+
Sbjct: 989 KPKRYRRIVEKIIESSKKKIEEQEDAEENQNKARPKR 1025
>06_03_0498 -
21432958-21434245,21434579-21435310,21435502-21435788,
21435955-21436026,21436130-21436264,21436887-21436925
Length = 850
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 148 AKMKKMINPSDSRIKNSERSEPKKKKPVD 234
A +++P S IK +SEP+KK+ +D
Sbjct: 788 ASTSVLLDPKCSNIKGRHKSEPRKKRLID 816
>03_01_0294 + 2260548-2260959,2261098-2261432,2261493-2261531
Length = 261
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 282 IVRNLFVGLPYFNYMRIYRFLLLWF-TPFAIFYPR-VAGVDHFFHFCKSFLYYFPRFSLF 109
+ + F G + R +R +L+++ P + + +F H C++FL P F+LF
Sbjct: 57 VFAHFFYGGFFLPTSRFFRGILIFYGISLHHLNPNSIVYIANFIHACEAFLGIRPHFALF 116
Query: 108 AH 103
H
Sbjct: 117 RH 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,582,433
Number of Sequences: 37544
Number of extensions: 318188
Number of successful extensions: 789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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