Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0793
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2224| Best HMM Match : Extensin_2 (HMM E-Value=0.16)                31   0.85 
SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)                     31   1.1  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         31   1.1  
SB_44038| Best HMM Match : DUF1168 (HMM E-Value=1.5)                   30   1.5  
SB_21254| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              29   2.6  
SB_8683| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  

>SB_2224| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
          Length = 299

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -3

Query: 249 FNYMRIYRFLLLWFTPF--AIFY--PRVAGVDHFFHFCKSFLYYFPRFSLFAHY 100
           F Y   +R   +++ PF  + FY  P  A  D++  F  SF+YY P  + F +Y
Sbjct: 109 FFYYAPFRASFVYYAPFRASFFYYAPFRASFDYYAPFRASFVYYAPFRASFVYY 162


>SB_385| Best HMM Match : SRP54_N (HMM E-Value=1.1)
          Length = 210

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +1

Query: 109 KQRKTRKIVEKRFAKMKKMINPSDSRIKNSERSEPKKKKPVDPHVIKIRKSHKQVPHYSS 288
           K     K  EK  +K  K   P+    K   +  PKK KPV   +   +K+ K+ P  + 
Sbjct: 71  KAESKPKSAEK--SKSSKSKTPAKKETKKESKKSPKKSKPVTVKITSGKKTPKKSPKKAH 128

Query: 289 NT 294
            T
Sbjct: 129 KT 130


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 545  NHQHMYLCEDMLSLKSWVLDNP*SYSILSSKFFQFSKDTISNIWYAFSIKTIHH 384
            N   M+L  D+++    V D     S  S+K F   K T+ +I   + IKTIH+
Sbjct: 1871 NEDPMHLGRDIMTRVLKVFDVTFVISASSNKNFDLIKSTLQSIIAKYGIKTIHY 1924


>SB_44038| Best HMM Match : DUF1168 (HMM E-Value=1.5)
          Length = 149

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +1

Query: 124 RKIVEKRFAKMKKMINPSDSRIKNSERSEPKKKKPVDPHVIKIRKSHKQVPHYSSNTTC 300
           R++ E +    ++  N S+   ++ +R   K+K+   PH   +     QV  +   TTC
Sbjct: 73  RQLQELKRQGQERQQNMSEEEPEDKKRQRQKQKRQEPPHQQDVEVQEAQVESHEERTTC 131


>SB_21254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -3

Query: 249 FNYMRIYRFLLLWFTPFA---IFY-PRVAGVDHFFHFCKSFLYYFPRFSLFAHY 100
           F Y   +R   ++F PF    ++Y P  A   ++  F  SF+YY P  +LF +Y
Sbjct: 149 FVYYAPFRASFVYFAPFRASFVYYAPFRASFVYYAPFRASFVYYAPFRALFVYY 202


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 160 KMINPSDSRIKNSERSEPKKKKPVDPHVIKIRKSHKQ 270
           K+   SD++ K+SE+  PK K+  D    K +KSHK+
Sbjct: 822 KVEKKSDAKSKSSEK--PKTKRSADKEAKKQKKSHKK 856


>SB_8683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 214 KKKKPVDPHVIKIRKSHKQVPHYSSNTTCS*DRHI 318
           KK+K VD  +IK++ + K V H+S  T  +  RH+
Sbjct: 155 KKEKDVDKAIIKMQTAIKAVLHHSVKTEDNNTRHL 189


>SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 817

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/64 (21%), Positives = 35/64 (54%)
 Frame = +1

Query: 112 QRKTRKIVEKRFAKMKKMINPSDSRIKNSERSEPKKKKPVDPHVIKIRKSHKQVPHYSSN 291
           + +++++ E++F    K+ N  +S  +  E  + + +   D  + ++    ++VPH S +
Sbjct: 81  EHESKRLKEEKFMIAAKINNSLNSVNREVEHLKAELQDQ-DKRLAELASGRERVPHRSES 139

Query: 292 TTCS 303
           T+CS
Sbjct: 140 TSCS 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,587,992
Number of Sequences: 59808
Number of extensions: 416598
Number of successful extensions: 1357
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)