Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0792
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    34   0.024
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    29   0.69 
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    29   0.91 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    28   1.6  
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    28   1.6  
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    27   2.8  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    27   2.8  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   3.7  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   4.9  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    26   4.9  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   6.4  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   8.5  
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    25   8.5  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   8.5  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   8.5  

>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
 Frame = -2

Query: 290 KSSVQKHLPDPRSSND--GSVDVNEYVTVHESFGLNKD--ESTEAFKKLAKGKDSI---- 135
           +S +++H+ D  S+ +   SVD+++Y+  H    L+KD  + T++F  +  G+ S     
Sbjct: 7   ESPIEEHMNDSPSTKEKADSVDISDYIVSHSDDSLSKDIKKDTKSFLDVEHGEISTVDEF 66

Query: 134 -SWADFQELWKEYFSSDDPDVPGNYI 60
              + + E+      +DDP +P N I
Sbjct: 67  EEDSPYPEVRAAVPPTDDPSMPCNTI 92


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 100 YSFHNSWKSAQEIESLPLASFLKASVLSSLLRPKD-SCTVTYSLTSTEPSL 249
           + F+++W S  +  + P+AS+   SV +    PKD +  ++  L+ + PSL
Sbjct: 91  FYFNHNWSSDLQQANSPVASYSSQSVSNDSNFPKDVTSPISTDLSGSNPSL 141


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 193 SIRTKAPRPLKNWLKVKTQSLGQISRNCGRSISAATTRMYPVTTSSV 53
           S R +  R  +  LKV   S+G++       IS A +R+ PV   S+
Sbjct: 78  SARKRRNRKARENLKVNVSSIGEVLPEIDLDISVANSRLKPVIKDSL 124


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 614 IETTEPAQFNEPPVYRSVRREISIRGRHE 700
           IET   A F  PP+  +V+R++ IR  +E
Sbjct: 148 IETLTGALFQRPPLISAVKRQLRIRSIYE 176


>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 555 HVFTVFFDSDKSGVVENKTLNWLPRTSPNSEG 460
           HV  + F  D    +EN    WLP  S N  G
Sbjct: 86  HVIMICFAVDSRDSLENVITKWLPEVSSNCPG 117


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 191 NKDESTEAFKKLAKGKDS--ISWADFQELWKEYFSSDDPDVPGNYIF 57
           +K E  + +K   K   S  ++ ++FQ+++K++F   DP     Y+F
Sbjct: 23  DKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVF 69


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 305 SKRLAKSSVQKHLPDPRSSNDGSVDVNEY 219
           + + + S++Q H   P  SND S  VN+Y
Sbjct: 17  TNQASPSTIQSHSTQPVLSNDHSTKVNDY 45


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 185 DESTEAFKKLAKGKDSISWADFQELWKEY 99
           +E+++   KL K KD+      +ELW+E+
Sbjct: 172 EEASQISNKLEKEKDATGSKSIEELWEEH 200


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
            Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
 Frame = -2

Query: 365  KSYSGRMASSLGRVRQGPSCSKRLAKSSVQKHL----PD------PRSSNDGSVDVNEYV 216
            K  SG+   +  +   G     R  KS  +K+L    PD      P++SN+  V+  E  
Sbjct: 795  KILSGKFGEAFKKFEFGGEKMSRRRKSETKKNLVSILPDTEVDEYPKASNEWIVESEELP 854

Query: 215  TVHESFG-LNKDESTEAFKKLAKGKDSI 135
             VHE+     K   T+  +K  +G + +
Sbjct: 855  QVHETINQYRKSCETQRSRKSHEGSNDL 882


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +1

Query: 505 VFYDSTLIGVKEYGEDMEQFLFSDFGHHFVVTEPDQDRNDGAGAIQRTSGISISPTGNIY 684
           +FYD     + E+ ED      + F ++F  T P  + ++G   +      SI     +Y
Sbjct: 211 LFYDLNCQDIPEFFEDHMSEFMTAFLNYFTYTNPSLEGDEGETNVLIKVKASICEIVELY 270

Query: 685 T 687
           T
Sbjct: 271 T 271


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 475 RCSGQPVQSLVFYDSTLIGVKEYGEDMEQFLFSDF 579
           R SG+ +  L F+D   I   EYG+ + +  F  F
Sbjct: 146 RDSGESLPPLFFHDDECISTIEYGKQITRDRFDPF 180


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
 Frame = -2

Query: 374 WRRKSYSGRMASSLGRVRQGPSCSKRLAKSSVQKHLPDPRSSNDGSVDVNEYVTVHESFG 195
           W+++ +   +  S  R +      K+     V KH PD ++++    D + +  + +++ 
Sbjct: 93  WKQQDHYAVLGLSKYRYKADTEQIKKAHLKKVLKHHPDKKAASGNINDDSFFKCIQKAYE 152

Query: 194 LNKDE-STEAFKKLAKGKD-----SISWADFQELWKEYFSSD 87
           +  D      F  + +  D     S +   F ELW   F S+
Sbjct: 153 ILSDPVRRRQFDSVDENADVEPPESTTKETFFELWTPVFESE 194


>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 680 IFPVGLIDIPEVR*IAPAPSFRSWS 606
           IFP G IDIPE+    P+ S   WS
Sbjct: 34  IFPHGTIDIPEMT-FRPSDSQIDWS 57


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -2

Query: 218 VTVHESFGLNKDESTEAFKKLAKGKDSISWADFQELWKEYFSSD 87
           V + E+F  N + + E  K+L K     SW      W     SD
Sbjct: 432 VDLDENFDFNVNVTNEDAKQLKKSVIGSSWTTVNNDWNSVSKSD 475


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 448 SPTYDILQESMIAIWLGLQKQADADGDGKVTQDEWLAL 335
           S +  +L+E  +   L L    D+ GDG VT+DE +++
Sbjct: 712 STSVPVLEELQLRNKLFLTLLEDSIGDGDVTEDEKISI 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,573
Number of Sequences: 5004
Number of extensions: 71201
Number of successful extensions: 244
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)