Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0792
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37757| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)                 32   0.42 
SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16)                   31   0.74 
SB_45533| Best HMM Match : SAP (HMM E-Value=0.55)                      30   1.7  
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)           29   3.0  
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      29   3.0  
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    29   3.9  
SB_5126| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)           29   5.2  
SB_30961| Best HMM Match : I-set (HMM E-Value=0)                       28   6.9  
SB_23604| Best HMM Match : RVT_1 (HMM E-Value=4.6e-13)                 28   6.9  
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)          28   6.9  
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_13567| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   28   9.1  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   9.1  

>SB_37757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 669 DGKYLYVADTNNHSVRIVNL 728
           D K +Y+ADTNNH +R+V+L
Sbjct: 532 DSKRMYIADTNNHVIRVVDL 551



 Score = 31.1 bits (67), Expect = 0.97
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 672 GKYLYVADTNNHSVRIVNL 728
           G+ +YVADT NH++R +NL
Sbjct: 283 GEVIYVADTENHAIREINL 301


>SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)
          Length = 1239

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -3

Query: 310 AAAKDWQNLLCKSIFQIQDPAMMVQSMSTST*PCTSLLVSI-RTKAPRPLKNWLK-VKTQ 137
           A   D + L    ++   DP M ++ ++T    C      + RTK  RP   WLK +  Q
Sbjct: 193 AFTNDIEQLPLSIVYSTSDPEMQLEMLNTLLRECIDRHAPLKRTKVTRPPSPWLKELDIQ 252

Query: 136 SLGQISRN 113
            L Q  RN
Sbjct: 253 KLQQDCRN 260


>SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16)
          Length = 351

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 382 DADGDGKVTQDEWLA-LWDEYAKDPAAAKDWQNLLCKSIFQIQDPAMMV 239
           D DGDG +T+DE +  +    ++ P      + LL  S+F + DP M++
Sbjct: 117 DDDGDGALTEDEAITPVGQMLSRLPVDVVIGKMLLMGSVFHVTDPVMII 165


>SB_45533| Best HMM Match : SAP (HMM E-Value=0.55)
          Length = 371

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = -2

Query: 404 AGIAETSRR*WRRKSYSGRMASSLGRVRQGPSCSKRLAKSSVQKHLPDPRSSNDGSVDVN 225
           AG  E + +   + S S    SS G  R GPS      K  V   + D    ++  +   
Sbjct: 128 AGKIEDALKQGLKASTSEPSTSSAGSKRTGPSKGPATKKKKVWLGMDDLEDESEEDISDE 187

Query: 224 EYVTVHESF-GLNKDESTE 171
           EY  +H+   G +   STE
Sbjct: 188 EYNRIHQDMPGTSTSTSTE 206


>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
          Length = 806

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 29/122 (23%), Positives = 47/122 (38%)
 Frame = +2

Query: 314 VLGVLVPKS*PFVLSNFSVSISVGLFLQSQPDGDHAFLQDVVGGASRGPPSEFGDVLGSQ 493
           + G +VP     V++N S S ++ +       GD A  + ++  +S   PS+   V  S 
Sbjct: 295 IAGAVVP-----VITNHSASTNINILGDPGRCGDRAHRESLLPYSSSNTPSKQNPVSDSA 349

Query: 494 FKVLFSTTPLLSESKNTVKTWSSFFFLTSDTILSSLNPTKIETTEPAQFNEPPVYRSVRR 673
             V  ST    S   ++    +      +     SLN  +    EPA  N  P+      
Sbjct: 350 STVTQSTEVTASTVASSAAN-AGVVLTETQFATKSLNKIRPSCKEPAHLNPLPMTTETPP 408

Query: 674 EI 679
           EI
Sbjct: 409 EI 410


>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = -2

Query: 449 KPHLRHPARKHDRHLAGIAETSRR*WRRKSYSGRMASSLGRVRQGPSCSKRLAKSSVQKH 270
           +PH    ++KH  H +       +  R  SYS   +   GR +   S S   + SS   H
Sbjct: 155 RPHEEGSSKKHKSHHSSRQHGHSKSGRTSSYSSDSSPGSGREKSSHSRSVHKSHSSKHSH 214

Query: 269 LPDPRSSN 246
            P   S+N
Sbjct: 215 -PSSHSTN 221


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 287 SSVQKHLPDPRSSNDGSVDVNEYVTVHESFGLNKDESTEAFKKLAKGKDSISW 129
           S+++  + D   S +  +DVN  VT+ E+  +N+D + E    L K   + S+
Sbjct: 521 SAMEPTVGDLEKSVNHQIDVNAEVTLIENTNINRDNAEERLDDLQKNNKNGSY 573


>SB_5126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +3

Query: 669 DGKYLYVADTNNHSVRIVNL 728
           +G  L+V DT+NH++R+++L
Sbjct: 81  EGDRLFVGDTDNHAIRVISL 100


>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/59 (37%), Positives = 28/59 (47%)
 Frame = +2

Query: 482 LGSQFKVLFSTTPLLSESKNTVKTWSSFFFLTSDTILSSLNPTKIETTEPAQFNEPPVY 658
           L S    L S T LLS   +T    S   FL+SDT L S + T +  T+P+     P Y
Sbjct: 25  LSSDTIFLSSDTTLLSS--DTTFLSSDTIFLSSDTTLLSSDRTFLSPTQPSYPPTQPYY 81


>SB_13434| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.52)
          Length = 835

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 494 FKVLFSTTPLLSESKNTVKTWSSFFFLTSDTILSSLNPTKIETTEPAQFNEP 649
           F+ +FS T  L  S+ T +  S+F F+ S  ++ +L  ++I+  E    N P
Sbjct: 481 FQGIFSATYHLCPSRMTFQFDSAFMFIISGLVVIALYNSRIKKREDTGNNRP 532


>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1018

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -3

Query: 331 DEYAKDPAAAKDWQNLLCKSI--FQIQDPAMMVQSMSTST*PCTSLLVSIRTKA---PRP 167
           D+Y  +    K+ Q  L  S   FQ+ DP +M  S S +T    S ++S++  A   P+P
Sbjct: 129 DQYCCEVEYLKESQGFLQTSCAEFQVVDPPVMTSSPSNTT-ANVSDVISLQCTASGRPKP 187

Query: 166 LKNW 155
           L  W
Sbjct: 188 LITW 191


>SB_23604| Best HMM Match : RVT_1 (HMM E-Value=4.6e-13)
          Length = 438

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 330 TSTPRTQLQQKTGKIFCAKASSRSKIQQ*WFSRCQRVRDRAR 205
           TS+ R +L   T   FC   +S  K    W ++ Q++++  R
Sbjct: 4   TSSQRKRLNNATETYFCHTKTSHLKTNDIWLAKYQKIQEAKR 45


>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
          Length = 497

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 254 SSNDGSVDVNEYVTV-HESFGLNKDESTEAFKKLAKGKDSISWADFQELWKEYFS 93
           S +DG+ D N+Y+ V +  F     E TE   +L   + S++  D   L +EY++
Sbjct: 154 SDDDGNDDTNDYIDVDYNVFSAYSQEMTEEEAELK--EPSVATEDVDTLPEEYYT 206


>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 230 VNEYVTVHESFGLNKDESTEAFKKLAKGKDSISWADFQE 114
           V E V    SFG+ KD+  E  K+ A    S+  ADF++
Sbjct: 193 VEEKVKKRRSFGIFKDKDKEKDKEKAGSVISLETADFEK 231


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 263  DPRSSNDGSVDVNEYVTVHESFGLNKDESTEAFKKLAKGKDSISWAD 123
            D  ++ND +VD  E V    +   N D+ TEA  ++ +   S+++ D
Sbjct: 2100 DDVTNNDVTVDSAERVGGETTIAYNDDDVTEASNRMFEDDSSVAYND 2146


>SB_13567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -1

Query: 387 KPTLMETEKLLRTNG*LFGTSTPRTQLQQKTGKIFCAKASSRSKIQQ*WFSRCQRVRDRA 208
           K TL+  ++ LR+   +  TS  R +L   T   FC   +   +    W S  +++++  
Sbjct: 62  KWTLLVNQQALRSKKAMPVTSRQRKRLNSDTATYFCHNKTRHLRTNDLWMSNYRKIQEGN 121

Query: 207 R 205
           R
Sbjct: 122 R 122


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 362 SYSGRMASSLGRVRQGPSCSKRLAKSSV 279
           S  GR   ++GR+  G SCS R+ K S+
Sbjct: 196 SVYGRDVCTMGRMSYGASCSSRIIKGSM 223


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -1

Query: 645  SLNCAGSVVSILVGFSDDKMVSEVRKKKLLHVFTVFFDSDKSGVVENKTLNWLPRTSPNS 466
            ++  AG ++ I+V       +++ R+KKL H+F VF+D  K    + +     P  S   
Sbjct: 1588 AVGVAGGILLIIVVLIVAYFLTKGRRKKL-HLFNVFYDPTKQDQAQMRGAKGGPAVS-EG 1645

Query: 465  EGGPL 451
             G P+
Sbjct: 1646 VGNPV 1650


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,312,111
Number of Sequences: 59808
Number of extensions: 556355
Number of successful extensions: 1769
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)