Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0791
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   108   3e-25
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   2.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   5.4  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    25   5.4  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   7.1  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   7.1  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    24   9.4  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  108 bits (260), Expect = 3e-25
 Identities = 48/62 (77%), Positives = 57/62 (91%)
 Frame = +2

Query: 263 PSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVATAIRGAIILAK 442
           P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+ C+ EVATAIRGAII+ K
Sbjct: 73  PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGK 132

Query: 443 LS 448
           LS
Sbjct: 133 LS 134



 Score = 71.3 bits (167), Expect = 6e-14
 Identities = 28/43 (65%), Positives = 39/43 (90%)
 Frame = +3

Query: 126 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDF 254
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDY 70


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 129 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFSSARP 269
           +D+ EW P++    LV   ++   E  +++    K++E+ID     P
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELIDDQEETP 287


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 123 RAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRP 1
           ++HDHG  H + H DR      +  R  R++R     ++ P
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGP 759


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 142 SGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSLISPRP 264
           +G+L   ++ L  K++   +   + +LY+ K+S SL  P P
Sbjct: 304 AGYLIRKTSFLKKKQRGFYAFTHSGYLYEFKSSDSLQDPEP 344


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +3

Query: 126 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFSSARP*MMRFLRSCLYR 305
           K  Q+  V   + G + R+  +  L  ++L   P     I+D  +A       L   +Y+
Sbjct: 126 KRLQRFLVSENEAGNINRQEAVSMLPPLFLDVEP--HHVILDMCAAPGSKTAQLIEAVYK 183

Query: 306 NKHVPDSAHVSRHL 347
             ++ D+AH S++L
Sbjct: 184 KANIKDAAHDSKNL 197


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 281 PHHSGTGRGEINDLEFFDW*RKQVNALEFVDFSFANKTAEFGDRNPLF 138
           PHH  TG  +      +D+    V++LE V  + A +T E+ DRNPL+
Sbjct: 372 PHHR-TGT-KYRAYPTYDFACPIVDSLEGV--THALRTTEYRDRNPLY 415


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 276 MRFLRSCLYRNKHVPDSAHVSRH 344
           +++L S   R KH+P+   ++RH
Sbjct: 362 LKYLDSLRERYKHIPEIRRIARH 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,261
Number of Sequences: 5004
Number of extensions: 29259
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)