Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0791
(450 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 113 8e-26
07_01_0756 + 5819367-5820038,5820847-5821005 108 2e-24
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 44 6e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 37 0.009
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911... 29 2.3
11_05_0023 - 18447015-18447410,18448156-18448308,18448679-184495... 27 7.0
08_01_0312 + 2764744-2767390,2767632-2767990 27 7.0
07_03_1224 + 24991884-24992588 27 7.0
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10... 27 7.0
01_05_0422 - 22018579-22018698,22019548-22019644,22019744-220199... 27 7.0
06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979 27 9.2
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 113 bits (271), Expect = 8e-26
Identities = 53/64 (82%), Positives = 57/64 (89%)
Frame = +2
Query: 257 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVATAIRGAIIL 436
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGV C+ EVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 437 AKLS 448
AKLS
Sbjct: 141 AKLS 144
Score = 63.7 bits (148), Expect = 7e-11
Identities = 24/42 (57%), Positives = 37/42 (88%)
Frame = +3
Query: 126 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 251
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +I++
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVE 79
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 108 bits (260), Expect = 2e-24
Identities = 51/64 (79%), Positives = 56/64 (87%)
Frame = +2
Query: 257 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVATAIRGAIIL 436
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGV C+ EVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 437 AKLS 448
AKLS
Sbjct: 144 AKLS 147
Score = 63.7 bits (148), Expect = 7e-11
Identities = 25/42 (59%), Positives = 37/42 (88%)
Frame = +3
Query: 126 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 251
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +I++
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE 82
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 44.0 bits (99), Expect = 6e-05
Identities = 19/52 (36%), Positives = 32/52 (61%)
Frame = +2
Query: 272 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVATAIRGA 427
++ V+++ V K + G++ F+A V +GD GH+G+GV + EV AI A
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKA 222
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 36.7 bits (81), Expect = 0.009
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +2
Query: 344 FVAIGDNNGHIGLGVXCSNEVATAIRGAIILA 439
FV +GD + HI LGV C+ AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>01_03_0056 +
12089404-12090300,12090429-12090581,12090999-12091157,
12091575-12091734,12092185-12092201,12092682-12092798,
12092914-12093303
Length = 630
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 186 KIDKLESIYLFSLPIKEFEIIDFSSARP*MMRFL 287
K D S +LF P ++F +IDF +AR RF+
Sbjct: 462 KTDPNWSNFLFDEPTRKFNLIDFGAARDFPKRFV 495
>11_05_0023 -
18447015-18447410,18448156-18448308,18448679-18449524,
18449688-18449702
Length = 469
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -3
Query: 301 YRHD-LKNLIIQGRAEEKSMI 242
YRHD LKN++I G + KSMI
Sbjct: 366 YRHDNLKNMMITGFSSAKSMI 386
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +3
Query: 324 SAHVSRHLLPLATTTVILVWVSXAATKSPLPFEALLSLLS 443
+ HV LLPLAT T +A+ +PLP ALLSL S
Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRS 36
>07_03_1224 + 24991884-24992588
Length = 234
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 312 HVPDSAHVSRHLLPLATTTVILVWVSXAATKSPL 413
H A V H+LP A T + WV+ A SP+
Sbjct: 89 HPAHVAAVQGHVLPNALDTTAIDWVNAALAPSPV 122
>03_01_0013 -
105281-105552,105762-105838,105839-106524,106655-106738,
106914-107114,107202-107309,107766-107855,108505-108551,
109096-109276,110010-110135,110220-110386,110877-111072
Length = 744
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 283 NLIIQGRAEEKSMISNSLIGKENK*MLSSLSIFPSRTRRPSLVTGTHSFWSS 128
N +I RAE K +S+S+IG+E+ + + S++ G H F +S
Sbjct: 399 NNVIMRRAERKLKLSHSVIGEEDATYGKGKYVENEASDMRSIIFGLHLFDTS 450
>01_05_0422 -
22018579-22018698,22019548-22019644,22019744-22019908,
22022274-22022339,22022441-22022540,22022662-22023304
Length = 396
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 257 GEINDLEFFDW*RKQVNALEFVDFSFANKTAEFGD 153
GE+N L F W + NA + F NKT EF D
Sbjct: 215 GEVNSLGFPWWKEEHFNASDADGHGFLNKT-EFND 248
>06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979
Length = 361
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 111 HGRDHDRVHEDRHGLYLH 58
H RDH R+ HG YLH
Sbjct: 5 HDRDHVRLRSRVHGTYLH 22
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,466,915
Number of Sequences: 37544
Number of extensions: 206573
Number of successful extensions: 634
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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