Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0791
         (450 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              121   3e-28
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     31   0.44 
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   30   0.77 
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         30   0.77 
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      30   1.0  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   1.8  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   1.8  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   3.1  
SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)                       28   4.1  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 27   5.4  
SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)        27   5.4  
SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)                 27   7.2  
SB_54592| Best HMM Match : DUF123 (HMM E-Value=5.9)                    27   9.5  
SB_8546| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  121 bits (291), Expect = 3e-28
 Identities = 62/86 (72%), Positives = 69/86 (80%), Gaps = 1/86 (1%)
 Frame = +2

Query: 194 QTREHLLVF-FTNQRIRDH*FLLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 370
           +T EH+ +F    +      F LG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 371 HIGLGVXCSNEVATAIRGAIILAKLS 448
           H+GLGV CS EVATAIRGAIILAKLS
Sbjct: 84  HVGLGVKCSKEVATAIRGAIILAKLS 109



 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 31/37 (83%), Positives = 33/37 (89%)
 Frame = +3

Query: 144 WVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDF 254
           WVPVTKLGRLV++ KI  LE IYLFSLPIKEFEIIDF
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDF 44


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -3

Query: 445 QLSKDNSASNGSGDFVAAXDTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 266
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 265 RAEEK 251
           R +++
Sbjct: 293 RNQDE 297


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -3

Query: 445 QLSKDNSASNGSGDFVAAXDTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 266
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 265 RAEEK 251
           R +++
Sbjct: 577 RNQDE 581


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 168 GRVW*QEPTLSGLPCRAHDHGRDHDRVHEDRHGLYLH 58
           G +W +   L  LP     H  DHDR H  RH   +H
Sbjct: 103 GFLWQKNGVLLSLPPPQFRHSHDHDRHHYHRHHNNIH 139


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 230 QRIRDH*FLLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 385
           QR+R     L    N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 81  QRLRSKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 230 QRIRDH*FLLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 385
           QR+R     L    N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 141 QRLRGKANGLVERTNRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 272 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 385
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 272  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 385
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 272 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 385
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 272 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 385
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 322 TAHTFQGICCHWRQQRSYW 378
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_45835| Best HMM Match : TLD (HMM E-Value=0.4)
          Length = 174

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 139 KSGFLSPNSAVLFAKEKSTNSRAFTCFLYQSKNSRSL 249
           KSG L     ++F  E   +S+AF C LY +KN  SL
Sbjct: 56  KSGRLGGMPNIVFNSEYQWSSKAFLCTLY-NKNGYSL 91


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 320 GQRTRFKAFVAIGDNNGHIGLGVXCSNEVA 409
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


>SB_6385| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00099)
          Length = 437

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +2

Query: 143 VGSCHQTRPSCSRRKNRQTREHLLVFFTNQRIRDH*FLLGPSLNDEVLKIMPVQKQTRAG 322
           +G+  +  P  S+RK ++  +   +  T +RI       GP   D+ +  +  +K+TRAG
Sbjct: 14  LGAHGEVGPCASKRKRKKVSKE--IDCTGKRIST---TFGPIEPDKRMATVASKKKTRAG 68

Query: 323 QRTRFKAFVAIG 358
            R     F+A G
Sbjct: 69  HRAFVTRFMAEG 80


>SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)
          Length = 338

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 331 CALSGTCLFLYRHDLKNLIIQGRAEEKSMISNSL 230
           C LS T   LY HDL + + + + + + ++ NS+
Sbjct: 111 CVLSTTLFNLYLHDLSDSLRELQPQREGLVINSI 144


>SB_54592| Best HMM Match : DUF123 (HMM E-Value=5.9)
          Length = 179

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 282 FLRSCLYRNKHVPDSAHVSRHLLPLATTTVILVWVSXAATKSPLPFEA 425
           +LR C Y+  ++P   H+    L L     + +W S    K+   F+A
Sbjct: 23  YLRDCDYQKNNLPAYWHLKESWLYLLVEKKVEIWHSILRAKTYSHFDA 70


>SB_8546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 318 PDSAHVSRHLLPLATTTVILVWVSXAATKSPLPFEALLSLLS 443
           P+  HV +H + LAT +  ++  S    K+   F+ LL +++
Sbjct: 34  PEFKHVKKHQVNLATISYEIIEESEERLKTDSDFQQLLDIIT 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,545
Number of Sequences: 59808
Number of extensions: 239921
Number of successful extensions: 704
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)