Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0791
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   103   8e-23
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    31   0.51 
AF016440-8|ABD94107.1|  286|Caenorhabditis elegans Dehydrogenase...    31   0.51 
AF016440-7|AAB65901.2|  317|Caenorhabditis elegans Dehydrogenase...    31   0.51 
U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    27   6.3  
AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of...    27   6.3  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  103 bits (246), Expect = 8e-23
 Identities = 49/61 (80%), Positives = 54/61 (88%)
 Frame = +2

Query: 266 SLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVATAIRGAIILAKL 445
           +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGV CS EVATAIRGAI+ AKL
Sbjct: 97  NLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKL 156

Query: 446 S 448
           +
Sbjct: 157 A 157



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/41 (75%), Positives = 33/41 (80%)
 Frame = +3

Query: 129 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 251
           E + EW PVTKLGRLV+E KI  LE IYL SLPIKEFEIID
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIID 92


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 349 NKCLETCALSGTCLFLYR-HDLKNLIIQGRAEEKSMISNSLIGKEN 215
           ++CLE C +S  C F Y+  D+ N +I  R     M++  +    N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 349 NKCLETCALSGTCLFLYR-HDLKNLIIQGRAEEKSMISNSLIGKEN 215
           ++CLE C +S  C F Y+  D+ N +I  R     M++  +    N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331


>AF016440-8|ABD94107.1|  286|Caenorhabditis elegans Dehydrogenases,
           short chain protein17, isoform b protein.
          Length = 286

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 316 TCLFLYRHDLKNLIIQGRAEEKSMISNSLIGKEN 215
           T L L  H    +II GR EEK + +   IGKEN
Sbjct: 23  TALDLAAHPDNFVIIHGRTEEKCIATKDWIGKEN 56


>AF016440-7|AAB65901.2|  317|Caenorhabditis elegans Dehydrogenases,
           short chain protein17, isoform a protein.
          Length = 317

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 316 TCLFLYRHDLKNLIIQGRAEEKSMISNSLIGKEN 215
           T L L  H    +II GR EEK + +   IGKEN
Sbjct: 54  TALDLAAHPDNFVIIHGRTEEKCIATKDWIGKEN 87


>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 179 RRKNRQTREHLLVFFTNQRIRDH*FLLGPSLNDEVLKIMPVQKQTRAGQRTRFK-AFVAI 355
           R++ R T ++  +  T +RIR   F +  S    +L  +PV+K+    +  RF  A+++ 
Sbjct: 24  RKRRRATPKYRNLHATRERIRVESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISF 83

Query: 356 GDN 364
            DN
Sbjct: 84  LDN 86


>AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of
           mec and unc defectsprotein 2 protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 123 RAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQR 4
           R+ D  RD DR + DR   Y  +    RRE     R +QR
Sbjct: 354 RSRDRDRDRDRDNRDR---YFEKSANSRREEEQNRREQQR 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,748,524
Number of Sequences: 27780
Number of extensions: 172550
Number of successful extensions: 504
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)