Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0791
         (450 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...   120   6e-28
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...   120   6e-28
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...   120   6e-28
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative           120   6e-28
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...   120   6e-28
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)             119   1e-27
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con...    43   1e-04
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    29   1.5  
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi...    28   3.4  
At3g63100.1 68416.m07087 glycine-rich protein                          28   3.4  
At3g61940.1 68416.m06956 zinc transporter, putative similar to z...    28   3.4  
At4g26850.1 68417.m03865 expressed protein                             27   4.4  
At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger) fa...    27   7.7  
At3g27310.1 68416.m03413 expressed protein                             27   7.7  
At3g20290.1 68416.m02571 calcium-binding EF hand family protein ...    27   7.7  

>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score =  120 bits (288), Expect = 6e-28
 Identities = 55/65 (84%), Positives = 61/65 (93%)
 Frame = +2

Query: 254 LLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVATAIRGAII 433
           L+GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGV CS EVATAIRGAII
Sbjct: 82  LVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAII 141

Query: 434 LAKLS 448
           LAKLS
Sbjct: 142 LAKLS 146



 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 28/40 (70%), Positives = 37/40 (92%)
 Frame = +3

Query: 132 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 251
           ++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIID 80


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score =  120 bits (288), Expect = 6e-28
 Identities = 58/72 (80%), Positives = 64/72 (88%)
 Frame = +2

Query: 233 RIRDH*FLLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVAT 412
           +I DH  L+GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGV CS EVAT
Sbjct: 85  QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142

Query: 413 AIRGAIILAKLS 448
           AIRGAIILAKLS
Sbjct: 143 AIRGAIILAKLS 154



 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 27/40 (67%), Positives = 34/40 (85%)
 Frame = +3

Query: 132 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 251
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score =  120 bits (288), Expect = 6e-28
 Identities = 58/72 (80%), Positives = 64/72 (88%)
 Frame = +2

Query: 233 RIRDH*FLLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVAT 412
           +I DH  L+GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGV CS EVAT
Sbjct: 85  QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142

Query: 413 AIRGAIILAKLS 448
           AIRGAIILAKLS
Sbjct: 143 AIRGAIILAKLS 154



 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 27/40 (67%), Positives = 34/40 (85%)
 Frame = +3

Query: 132 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 251
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score =  120 bits (288), Expect = 6e-28
 Identities = 58/72 (80%), Positives = 64/72 (88%)
 Frame = +2

Query: 233 RIRDH*FLLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVAT 412
           +I DH  L+GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGV CS EVAT
Sbjct: 85  QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142

Query: 413 AIRGAIILAKLS 448
           AIRGAIILAKLS
Sbjct: 143 AIRGAIILAKLS 154



 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 27/40 (67%), Positives = 34/40 (85%)
 Frame = +3

Query: 132 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 251
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score =  120 bits (288), Expect = 6e-28
 Identities = 58/72 (80%), Positives = 64/72 (88%)
 Frame = +2

Query: 233 RIRDH*FLLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVAT 412
           +I DH  L+GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGV CS EVAT
Sbjct: 85  QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVAT 142

Query: 413 AIRGAIILAKLS 448
           AIRGAIILAKLS
Sbjct: 143 AIRGAIILAKLS 154



 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 27/40 (67%), Positives = 34/40 (85%)
 Frame = +3

Query: 132 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 251
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88


>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score =  119 bits (286), Expect = 1e-27
 Identities = 55/65 (84%), Positives = 60/65 (92%)
 Frame = +2

Query: 254 LLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVATAIRGAII 433
           L+GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGV CS EVATAIRGAII
Sbjct: 91  LIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAII 150

Query: 434 LAKLS 448
           LAKLS
Sbjct: 151 LAKLS 155



 Score = 60.5 bits (140), Expect = 5e-10
 Identities = 25/40 (62%), Positives = 34/40 (85%)
 Frame = +3

Query: 132 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 251
           ++++WVPVTKLGRLV  G I ++E IYL SLP+KE++IID
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIID 89


>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
           contains Pfam profiles PF03719: Ribosomal protein S5,
           C-terminal domain, PF00333: Ribosomal protein S5,
           N-terminal domain
          Length = 303

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 17/56 (30%), Positives = 35/56 (62%)
 Frame = +2

Query: 275 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVXCSNEVATAIRGAIILAK 442
           + V+++  V K  + G++ +F+A V +GD  G++G+G   + EV  A++ + I A+
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDAR 204


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 117 HDHGRDHDRVHEDRHGLYLH 58
           HDH  DHD  H D H  + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339


>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
           transporter ZIP2 [Arabidopsis thaliana]
           gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 353

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 341 AFVAIGDNNGHIGLGVXCSNE 403
           AFVA G NN H+G  V  S E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = -1

Query: 111 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 19
           HGRDH    DR H   HG + HR  R  R   H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143


>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; similar to zinc transporter
           ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
           of the cation diffusion facilitator (CDF) family, or
           cation efflux (CE) family, PMID:11500563
          Length = 334

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 117 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 13
           HDHG  HD  H   HG  Y  R  ++  +++ +  +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193


>At4g26850.1 68417.m03865 expressed protein
          Length = 442

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -3

Query: 361 VANGNKCLETCALSGTCLFLYRHDLKNLIIQGRAEEKSMISNSLI 227
           V  G  CL  C L+G  L LY    KNL+  G   EK +IS+  I
Sbjct: 24  VGCGRNCLGACCLNGARLPLYA--CKNLVKSG---EKLVISHEAI 63


>At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 357

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 132 LPCRAHDHGRD--HDRVHEDRHGLYLHRVIRI 43
           LP  +H H +   HDR+H D H L  H V +I
Sbjct: 69  LPSCSHHHIQSLLHDRLHRDDHWLCDHLVPKI 100


>At3g27310.1 68416.m03413 expressed protein
          Length = 251

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 212 LVFFTNQRIRDH*FLLGPSLNDEVLKIMPVQKQTRA 319
           +V+F+N + +D      P LN+E+L +  ++  T+A
Sbjct: 177 IVYFSNDQPKDDGGSSTPYLNEEILSLKDLEAMTKA 212


>At3g20290.1 68416.m02571 calcium-binding EF hand family protein
           similar to EH-domain containing protein 1 from {Mus
           musculus} SP|Q9WVK4 and {Homo sapiens} SP|Q9H4M9,
           receptor-mediated endocytosis 1 from [Caenorhabditis
           elegans] GI:13487775, GI:13487777, GI:13487779; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 545

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 246 IDFSSARP*MMRFLRSCLYRNKHVPDSAHVSRHLLPLATTTVILVWVSXAATK 404
           +DF +  P  M  L   + + KH   S+  + +  P A T++   W S  ++K
Sbjct: 98  VDFKNINPPTMEGLGVLMAKKKHSSKSSDPNMNGSPAADTSLTAHWFSSKSSK 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,264,730
Number of Sequences: 28952
Number of extensions: 162502
Number of successful extensions: 485
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)