Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0788
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    71   1e-14
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.90 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   3.6  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.8  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   6.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.3  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 70.5 bits (165), Expect = 1e-14
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = +1

Query: 409 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPA 510
           LQDVYKIGGIGTVPVGRVETGVLKPG +VVFAPA
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAPA 34



 Score = 49.2 bits (112), Expect = 4e-08
 Identities = 22/24 (91%), Positives = 22/24 (91%)
 Frame = +3

Query: 504 PRNITTEVKSVEMHHEALQEAVPG 575
           P NITTEVKSVEMHHEAL EAVPG
Sbjct: 33  PANITTEVKSVEMHHEALPEAVPG 56


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 477 QHTSFN-SADGHGTNTTDFVYVLQ 409
           ++ SFN +A+GHG NT+   Y  Q
Sbjct: 280 EYNSFNWTANGHGHNTSSHNYYAQ 303


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 498 LCPRNITTEVKSVEMH 545
           LCPR+I  ++K  E H
Sbjct: 22  LCPRSIDEKIKRQERH 37


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 229 FRAHFWMARDNMLEPSTKMPWFK 297
           +R + W+  D+     TKM W K
Sbjct: 825 YRGNQWVGFDDERSLKTKMAWLK 847


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 602 VLYVETYIVSRYSFLESFVVHLHRLDFSSDVAGAKTTMV 486
           VLY   +  SR S +  F+ HL   D S  +    T ++
Sbjct: 45  VLYTLLFGRSRKSRMNYFITHLALADLSVGLINVLTDII 83


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 232  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 104
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 232  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 104
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,449
Number of Sequences: 336
Number of extensions: 5165
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)