Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0788
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                153   1e-37
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           87   1e-17
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              60   1e-09
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   30   1.8  
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     29   3.2  
SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)                   29   4.2  
SB_37810| Best HMM Match : DUF548 (HMM E-Value=1.7)                    29   4.2  
SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)                   29   5.6  
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             28   7.4  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      28   9.8  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  153 bits (372), Expect = 1e-37
 Identities = 68/87 (78%), Positives = 77/87 (88%)
 Frame = +3

Query: 504 PRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 683
           P NITTEVKSVEMHHE+L EA+PGDNVGFNVKNVSVK+++RG VAGD KNNPPK    FT
Sbjct: 141 PSNITTEVKSVEMHHESLAEALPGDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFT 200

Query: 684 AQVIVLNHPGQISNGYTPVLDCHTAHM 764
           AQVIV+NHPG+I  GY+PVLDCHTAH+
Sbjct: 201 AQVIVMNHPGEIHAGYSPVLDCHTAHI 227



 Score =  126 bits (305), Expect = 2e-29
 Identities = 59/90 (65%), Positives = 70/90 (77%), Gaps = 6/90 (6%)
 Frame = +1

Query: 259 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 420
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 421 YKIGGIGTVPVGRVETGVLKPGTIVVFAPA 510
           YKIGGIGTVPVGRVETGVLKPGT+V F+P+
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSPS 142


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 37/72 (51%), Positives = 54/72 (75%)
 Frame = +2

Query: 2   LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
           L+++A  GEFE G  + GQTREHA+LA T GVK L++ VNKMD     ++E R+EEIK +
Sbjct: 251 LVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVK 310

Query: 182 VSSYIKKIGYNP 217
           ++ ++KK+G+NP
Sbjct: 311 LTPFLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 28/43 (65%), Positives = 33/43 (76%)
 Frame = +2

Query: 2   LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 130
           L+V A TGEFEAG    GQTREHA+L  +LGV QLIV +NK+D
Sbjct: 42  LVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84


>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
 Frame = -2

Query: 312 LHLPSLEPRHFG*RLQHVVSCHPEMGTKATAAGL*PIFLMYEDTSFLISSNLGSLYGGSV 133
           +H+    P   G R+ H V+     G  ATA  + P  +M +     ++    + +GG  
Sbjct: 420 IHIGPYGPPPSGIRVSHAVTTASAQGAAATATVMNPAIIMDQTRYIALTQQAAAGFGGLA 479

Query: 132 ESILF--TPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAA 10
            + +    P  S +      S     + P L +P ++S +P +
Sbjct: 480 TNCMAGDVPGSSSMMDVTTPSSGIYSM-PVLGVPPASSGIPVS 521


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -2

Query: 195  MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 43
            +Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 42   IPASNSPVPAAT 7
            +   NSP+P+ T
Sbjct: 856  VTNGNSPIPSGT 867


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
 Frame = -3

Query: 578 VSRYSFLESFVVHLHR---LDFSSDVAGAKTTMVPGFNTPVSTLPTGTVPIPP---ILYT 417
           V     LE  + H  R   L   +D       + PG  TPV TL  G+ P+ P   +L+T
Sbjct: 14  VPSQDMLERLIAHAERNSNLGRVADKPALYAFVSPGLRTPVITLSIGSSPLKPYSHLLFT 73

Query: 416 SCRGRRRGLSVGRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEG 270
           S    R   ++  +     +R+S+    + L + RST  P+    ++ G
Sbjct: 74  SMDNLRPRSTMFSS----TTRSSLSPTKTRLDAYRST-SPVKTSSVLSG 117


>SB_24023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +1

Query: 244 WMARDNMLEPSTKMPWFKG-WQVERKEGKA--DGKCLIEALDAILPPARPTDKPLRLPLQ 414
           W+   ++L+     P  KG W+V   EGK    G+ L+   DA     +    P  +P  
Sbjct: 131 WVPSTDVLDEPQPEPDHKGPWEVVL-EGKVLEAGQALMSDEDADEDATKDMPDPTPVPKV 189

Query: 415 DVYKIGGIGTVPVGRVETGVLKPGTIVV 498
               I   G +PV +V+T +  PG I V
Sbjct: 190 QT-NIDMPGPIPVPKVQTNIDMPGPIPV 216


>SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)
          Length = 359

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
 Frame = -3

Query: 578 VSRYSFLESFVVHLHR---LDFSSDVAGAKTTMVPGFNTPVSTLPTGTVPIPP----ILY 420
           V     LE  + H  R   L   +D       + PG  TPV TL  G+ P+ P    +LY
Sbjct: 282 VPSQDMLERLIAHAERNSNLGRVADKPALYAFVSPGLRTPVITLSIGSSPLKPYSHLLLY 341

Query: 419 TSC 411
             C
Sbjct: 342 VIC 344


>SB_37810| Best HMM Match : DUF548 (HMM E-Value=1.7)
          Length = 282

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 495 CLCPRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 641
           CL P N+   ++SV  ++  LQ++     +G N  N   K +    +AG
Sbjct: 148 CLMPSNLVINMQSVVGYNNKLQKSTDSMTLGANAINTETKPVGAHNMAG 196


>SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)
          Length = 1106

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 495 CLCPRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 641
           CL P N+    +SV  ++  LQ+A     +G N  N   K +    +AG
Sbjct: 170 CLMPSNLVINTQSVVGYNNKLQKATDFMKLGANAINTETKPVGAHNMAG 218


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 388 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 507
           ++P    + D Y + G+GTV  G    G+++    ++  P
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 2   LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 178
           ++VAA   EF A ++KNG     ++  F  G + QL +G + M+ TE P   P FE++K 
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424

Query: 179 EVSS 190
              S
Sbjct: 425 RTVS 428


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/78 (23%), Positives = 36/78 (46%)
 Frame = +2

Query: 164 EEIKKEVSSYIKKIGYNPAAVAFVPISGWHETTCWSLQPKCLGSRDGRWSVRKAKLTENA 343
           EE++K++      +G+ P ++ F  + GW  T    ++    G+ +    VR   +T   
Sbjct: 236 EELEKQLQQKGLCVGHEPDSLEFSSLGGWVATRASGMKKNVYGNIED-IIVRIRMVTPQG 294

Query: 344 SLKLSMPSCHLPAPLTSP 397
           +++    SC +P   T P
Sbjct: 295 TVE---KSCQVPRMSTGP 309


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,872,343
Number of Sequences: 59808
Number of extensions: 695854
Number of successful extensions: 2103
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2100
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)