Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0788
(781 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 154 6e-38
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 154 6e-38
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 154 6e-38
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 100 2e-21
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 86 2e-17
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 79 5e-15
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 79 5e-15
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 40 0.002
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 39 0.003
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 39 0.003
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 37 0.019
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 37 0.019
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 37 0.019
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.23
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.92
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 30 1.6
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 30 1.6
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 30 1.6
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 30 1.6
Z82283-3|CAB05283.1| 485|Caenorhabditis elegans Hypothetical pr... 29 2.8
U00064-3|AAB52706.2| 375|Caenorhabditis elegans Hypothetical pr... 29 2.8
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 29 3.7
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 29 3.7
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.9
AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear recep... 29 4.9
AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormo... 29 4.9
AF036694-3|AAB88343.3| 344|Caenorhabditis elegans Hypothetical ... 28 6.5
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 8.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 154 bits (374), Expect = 6e-38
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +1
Query: 256 DNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 435
DNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGG
Sbjct: 165 DNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGG 224
Query: 436 IGTVPVGRVETGVLKPGTIVVFAP 507
IGTVPVGRVETG++KPG +V FAP
Sbjct: 225 IGTVPVGRVETGIIKPGMVVTFAP 248
Score = 153 bits (371), Expect = 1e-37
Identities = 68/87 (78%), Positives = 77/87 (88%)
Frame = +3
Query: 504 PRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 683
P+N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 248 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 307
Query: 684 AQVIVLNHPGQISNGYTPVLDCHTAHM 764
AQVI++NHPGQISNGYTPVLDCHTAH+
Sbjct: 308 AQVIIMNHPGQISNGYTPVLDCHTAHI 334
Score = 79.8 bits (188), Expect = 2e-15
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = +2
Query: 104 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH 253
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFN 163
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 154 bits (374), Expect = 6e-38
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +1
Query: 256 DNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 435
DNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGG
Sbjct: 199 DNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGG 258
Query: 436 IGTVPVGRVETGVLKPGTIVVFAP 507
IGTVPVGRVETG++KPG +V FAP
Sbjct: 259 IGTVPVGRVETGIIKPGMVVTFAP 282
Score = 153 bits (371), Expect = 1e-37
Identities = 68/87 (78%), Positives = 77/87 (88%)
Frame = +3
Query: 504 PRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 683
P+N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 684 AQVIVLNHPGQISNGYTPVLDCHTAHM 764
AQVI++NHPGQISNGYTPVLDCHTAH+
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHI 368
Score = 141 bits (342), Expect = 4e-34
Identities = 68/84 (80%), Positives = 73/84 (86%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
L+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI E
Sbjct: 114 LVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNE 173
Query: 182 VSSYIKKIGYNPAAVAFVPISGWH 253
VS +IKKIGYNP AV FVPISG++
Sbjct: 174 VSGFIKKIGYNPKAVPFVPISGFN 197
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 154 bits (374), Expect = 6e-38
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +1
Query: 256 DNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 435
DNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGG
Sbjct: 199 DNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGG 258
Query: 436 IGTVPVGRVETGVLKPGTIVVFAP 507
IGTVPVGRVETG++KPG +V FAP
Sbjct: 259 IGTVPVGRVETGIIKPGMVVTFAP 282
Score = 153 bits (371), Expect = 1e-37
Identities = 68/87 (78%), Positives = 77/87 (88%)
Frame = +3
Query: 504 PRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 683
P+N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F
Sbjct: 282 PQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFH 341
Query: 684 AQVIVLNHPGQISNGYTPVLDCHTAHM 764
AQVI++NHPGQISNGYTPVLDCHTAH+
Sbjct: 342 AQVIIMNHPGQISNGYTPVLDCHTAHI 368
Score = 141 bits (342), Expect = 4e-34
Identities = 68/84 (80%), Positives = 73/84 (86%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
L+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI E
Sbjct: 114 LVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNE 173
Query: 182 VSSYIKKIGYNPAAVAFVPISGWH 253
VS +IKKIGYNP AV FVPISG++
Sbjct: 174 VSGFIKKIGYNPKAVPFVPISGFN 197
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 99.5 bits (237), Expect = 2e-21
Identities = 69/155 (44%), Positives = 83/155 (53%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
L+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I++
Sbjct: 114 LVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR- 169
Query: 182 VSSYIKKIGYNPAAVAFVPISGWHETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSM 361
+ + +P + ETTC C GSRDG + RK L E S +L
Sbjct: 170 ----LFHLSQSPDST---------ETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLT 216
Query: 362 PSCHLPAPLTSPCVFPCKTYTKSVVLVPCPSAELK 466
PS H A LT VF + T+S L P S L+
Sbjct: 217 PSSHHNAQLTDHSVFHSRMCTRSEELEPSQSDVLR 251
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
L+++A GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+ +
Sbjct: 216 LVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGK 275
Query: 182 VSSYIKKIGYNPAA-VAFVPISG 247
++ +++K+G+NP + +VP SG
Sbjct: 276 LTPFLRKLGFNPKTDITYVPCSG 298
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/96 (28%), Positives = 46/96 (47%)
Frame = +3
Query: 471 CVETRYHCCLCPRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 650
CV+ + P +V + + V GDN+ F +K + EL+ G++ S
Sbjct: 363 CVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFII-CSP 421
Query: 651 NNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTA 758
++ K F A+V+VL H I++GY+ VL +A
Sbjct: 422 DSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSA 457
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1
Query: 334 GKCLIEALDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 507
G C IE +D +LP R + P+R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMP 374
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK
Sbjct: 277 LVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNN 334
Query: 182 VSSYI-KKIGYNPAAVAFVPISGW 250
+S ++ ++ G++ FVP+SG+
Sbjct: 335 LSVFLTRQAGFSKP--KFVPVSGF 356
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 331 DGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAP 507
DG CL+E +D+ + P P+D PLR+ + DV K+ V G++E+G V K + + +
Sbjct: 371 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSS 430
Query: 508 ATS 516
T+
Sbjct: 431 VTA 433
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 78.6 bits (185), Expect = 5e-15
Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK
Sbjct: 295 LVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNN 352
Query: 182 VSSYI-KKIGYNPAAVAFVPISGW 250
+S ++ ++ G++ FVP+SG+
Sbjct: 353 LSVFLTRQAGFSKP--KFVPVSGF 374
Score = 48.4 bits (110), Expect = 6e-06
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 331 DGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAP 507
DG CL+E +D+ + P P+D PLR+ + DV K+ V G++E+G V K + + +
Sbjct: 389 DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSS 448
Query: 508 ATS 516
T+
Sbjct: 449 VTA 451
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +3
Query: 525 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 704
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 705 HPGQISNGYTPVLDCHTAHMPANL 776
HP I Y +L + A L
Sbjct: 479 HPTTIKPNYQAMLHIGSVRQTATL 502
Score = 31.1 bits (67), Expect = 0.92
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +1
Query: 394 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATS 516
P + D+Y + G+GT+ G + +G ++ I++ P ++
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSN 412
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 286 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 456
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 457 RVETGVLKPG 486
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
L++AA G E QT+EH +LA +GVK + + +NK D E E + ++ E
Sbjct: 137 LVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEME 185
Query: 182 VSSYIKKIGYNPAAVAFV 235
+ G+N A +
Sbjct: 186 ARELLSLHGFNGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 286 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 456
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 457 RVETGVLKPG 486
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
L++AA G E QT+EH +LA +GVK + + +NK D E E + ++ E
Sbjct: 137 LVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEME 185
Query: 182 VSSYIKKIGYNPAAVAFV 235
+ G+N A +
Sbjct: 186 ARELLSLHGFNGDATPVI 203
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.7 bits (81), Expect = 0.019
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 322 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 486
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 281
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 56 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 211
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 202
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 513 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 635
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.019
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 322 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 486
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 282
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 56 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 211
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 513 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 635
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.019
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 322 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 486
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 282
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +2
Query: 56 QTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 211
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 513 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 635
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -2
Query: 123 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMS 1
LF PT+SC+ + AS S P + PA N VP AT+S
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLS 52
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.92
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +1
Query: 394 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATS 516
P + D+Y + G+GT+ G + +G ++ I++ P ++
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSN 413
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 186 PHTSRRLATTQLLSLSCPFLDGTRQ 260
PH SR T L+ SCPFLD +
Sbjct: 158 PHLSRNSFTANALNCSCPFLDAANE 182
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 186 PHTSRRLATTQLLSLSCPFLDGTRQ 260
PH SR T L+ SCPFLD +
Sbjct: 158 PHLSRNSFTANALNCSCPFLDAANE 182
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 186 PHTSRRLATTQLLSLSCPFLDGTRQ 260
PH SR T L+ SCPFLD +
Sbjct: 158 PHLSRNSFTANALNCSCPFLDAANE 182
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 186 PHTSRRLATTQLLSLSCPFLDGTRQ 260
PH SR T L+ SCPFLD +
Sbjct: 158 PHLSRNSFTANALNCSCPFLDAANE 182
>Z82283-3|CAB05283.1| 485|Caenorhabditis elegans Hypothetical
protein T23G4.3 protein.
Length = 485
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +2
Query: 128 DSTEPPYSEP-RFEEIKKEVSSYIKKIGYNPAAVAFV--PISGWHETTCWSLQPKCLGSR 298
D TE + P +++E++KE+ + + + AA A P+ + S+ K + R
Sbjct: 78 DCTEGAEATPEQWKELEKELDKVVAFMKDSEAAKATETDPVKRYKNLCQLSMTLKIMSPR 137
Query: 299 DGRWSVRKAKLTENASLKL 355
DG W + K TE L +
Sbjct: 138 DGGWKILHDKRTEAEQLAI 156
>U00064-3|AAB52706.2| 375|Caenorhabditis elegans Hypothetical
protein ZC155.4 protein.
Length = 375
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = -3
Query: 677 ICSTLRWVVFGVTSNITTTQFLDGHVLYVETYIVSRYSFLESFVVHLHRLDFSSDVAGAK 498
I S L +VFG+ ++ +FL V++ +S + ++ +++ ++S+ +
Sbjct: 295 IASVLDVLVFGLARSLIMPKFLGSDVIFYHVNDISSFLKTDAAANNIYLAGWTSNNPTEQ 354
Query: 497 TTMVPGFNTPVSTLPTGTVP 438
+ N P T GTVP
Sbjct: 355 VWLRDYLNVPFLTDNVGTVP 374
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 497 SLPPQHHY*SQVCGDAPRSS 556
SLPPQHH+ S + D+P +S
Sbjct: 2019 SLPPQHHHVSPLSNDSPSNS 2038
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 497 SLPPQHHY*SQVCGDAPRSS 556
SLPPQHH+ S + D+P +S
Sbjct: 2022 SLPPQHHHVSPLSNDSPSNS 2041
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 525 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 704
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 705 H 707
H
Sbjct: 509 H 509
>AY305837-1|AAR11982.1| 376|Caenorhabditis elegans nuclear receptor
NHR-124 protein.
Length = 376
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -3
Query: 455 PTGTVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILV 276
PTGT P +L+ + R + + + + + L ++ C+P QG+
Sbjct: 236 PTGTEMFPDVLFEIPKCREIIMDLLTSPMKPLMELQITESEYLLLNMIVICNPAIQGMSP 295
Query: 275 EGSNMLSRAIQKWAR 231
G ++LSR Q +AR
Sbjct: 296 SGQDLLSRHQQVYAR 310
>AF016443-4|AAC24282.2| 376|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 124 protein.
Length = 376
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -3
Query: 455 PTGTVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILV 276
PTGT P +L+ + R + + + + + L ++ C+P QG+
Sbjct: 236 PTGTEMFPDVLFEIPKCREIIMDLLTSPMKPLMELQITESEYLLLNMIVICNPAIQGMSP 295
Query: 275 EGSNMLSRAIQKWAR 231
G ++LSR Q +AR
Sbjct: 296 SGQDLLSRHQQVYAR 310
>AF036694-3|AAB88343.3| 344|Caenorhabditis elegans Hypothetical
protein CD4.5 protein.
Length = 344
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/63 (26%), Positives = 26/63 (41%)
Frame = +2
Query: 110 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHETTCWSLQPKCL 289
+ V K+ ST E +K+ S +N F +SG T WSL + +
Sbjct: 148 ITVQKITSTASSILESSQVNVKELSSCSALTCTFNDGDSCFFGLSGVGSTAAWSLSDRLV 207
Query: 290 GSR 298
G+R
Sbjct: 208 GNR 210
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 691 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 560
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,875,422
Number of Sequences: 27780
Number of extensions: 495316
Number of successful extensions: 1516
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -