Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0788
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 153 2e-37
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 153 2e-37
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 153 2e-37
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 153 2e-37
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 83 2e-16
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 66 2e-11
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 54 1e-07
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 48 9e-06
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 46 2e-05
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ... 32 0.49
At2g31060.1 68415.m03790 elongation factor family protein contai... 32 0.49
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 31 1.1
At4g38760.1 68417.m05489 hypothetical protein KIAA0169 gene, Hom... 29 3.5
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 29 3.5
At5g07670.1 68418.m00878 F-box family protein similar to unknown... 29 4.6
At2g39560.1 68415.m04853 expressed protein 29 4.6
At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein s... 28 6.0
At1g21530.1 68414.m02693 AMP-binding protein, putative strong si... 28 6.0
At5g19490.1 68418.m02322 repressor protein-related similar to re... 28 8.0
At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa... 28 8.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 153 bits (370), Expect = 2e-37
Identities = 65/87 (74%), Positives = 80/87 (91%)
Frame = +3
Query: 504 PRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 683
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 684 AQVIVLNHPGQISNGYTPVLDCHTAHM 764
+QVI++NHPGQI NGY PVLDCHT+H+
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHI 356
Score = 124 bits (299), Expect = 7e-29
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
LI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KE
Sbjct: 114 LIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKE 173
Query: 182 VSSYIKKIGYNPAAVAFVPISGW 250
VSSY+KK+GYNP + FVPISG+
Sbjct: 174 VSSYLKKVGYNPDKIPFVPISGF 196
Score = 106 bits (255), Expect = 1e-23
Identities = 53/84 (63%), Positives = 61/84 (72%)
Frame = +1
Query: 256 DNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 435
DNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQDVYKIGG
Sbjct: 199 DNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIGG 246
Query: 436 IGTVPVGRVETGVLKPGTIVVFAP 507
IGTVPVGRVETG++KPG +V FAP
Sbjct: 247 IGTVPVGRVETGMIKPGMVVTFAP 270
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 153 bits (370), Expect = 2e-37
Identities = 65/87 (74%), Positives = 80/87 (91%)
Frame = +3
Query: 504 PRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 683
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 684 AQVIVLNHPGQISNGYTPVLDCHTAHM 764
+QVI++NHPGQI NGY PVLDCHT+H+
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHI 356
Score = 124 bits (299), Expect = 7e-29
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
LI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KE
Sbjct: 114 LIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKE 173
Query: 182 VSSYIKKIGYNPAAVAFVPISGW 250
VSSY+KK+GYNP + FVPISG+
Sbjct: 174 VSSYLKKVGYNPDKIPFVPISGF 196
Score = 106 bits (255), Expect = 1e-23
Identities = 53/84 (63%), Positives = 61/84 (72%)
Frame = +1
Query: 256 DNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 435
DNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQDVYKIGG
Sbjct: 199 DNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIGG 246
Query: 436 IGTVPVGRVETGVLKPGTIVVFAP 507
IGTVPVGRVETG++KPG +V FAP
Sbjct: 247 IGTVPVGRVETGMIKPGMVVTFAP 270
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 153 bits (370), Expect = 2e-37
Identities = 65/87 (74%), Positives = 80/87 (91%)
Frame = +3
Query: 504 PRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 683
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 684 AQVIVLNHPGQISNGYTPVLDCHTAHM 764
+QVI++NHPGQI NGY PVLDCHT+H+
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHI 356
Score = 124 bits (299), Expect = 7e-29
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
LI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KE
Sbjct: 114 LIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKE 173
Query: 182 VSSYIKKIGYNPAAVAFVPISGW 250
VSSY+KK+GYNP + FVPISG+
Sbjct: 174 VSSYLKKVGYNPDKIPFVPISGF 196
Score = 106 bits (255), Expect = 1e-23
Identities = 53/84 (63%), Positives = 61/84 (72%)
Frame = +1
Query: 256 DNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 435
DNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQDVYKIGG
Sbjct: 199 DNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIGG 246
Query: 436 IGTVPVGRVETGVLKPGTIVVFAP 507
IGTVPVGRVETG++KPG +V FAP
Sbjct: 247 IGTVPVGRVETGMIKPGMVVTFAP 270
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 153 bits (370), Expect = 2e-37
Identities = 65/87 (74%), Positives = 80/87 (91%)
Frame = +3
Query: 504 PRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 683
P +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT
Sbjct: 270 PTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFT 329
Query: 684 AQVIVLNHPGQISNGYTPVLDCHTAHM 764
+QVI++NHPGQI NGY PVLDCHT+H+
Sbjct: 330 SQVIIMNHPGQIGNGYAPVLDCHTSHI 356
Score = 124 bits (299), Expect = 7e-29
Identities = 58/83 (69%), Positives = 70/83 (84%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
LI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P YS+ R++EI KE
Sbjct: 114 LIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKE 173
Query: 182 VSSYIKKIGYNPAAVAFVPISGW 250
VSSY+KK+GYNP + FVPISG+
Sbjct: 174 VSSYLKKVGYNPDKIPFVPISGF 196
Score = 106 bits (255), Expect = 1e-23
Identities = 53/84 (63%), Positives = 61/84 (72%)
Frame = +1
Query: 256 DNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGG 435
DNM+E ST + W+KG L+EALD I P RP+DKPLRLPLQDVYKIGG
Sbjct: 199 DNMIERSTNLDWYKG------------PTLLEALDQINEPKRPSDKPLRLPLQDVYKIGG 246
Query: 436 IGTVPVGRVETGVLKPGTIVVFAP 507
IGTVPVGRVETG++KPG +V FAP
Sbjct: 247 IGTVPVGRVETGMIKPGMVVTFAP 270
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 83.4 bits (197), Expect = 2e-16
Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 181
L+++A GEFE G + GQTREH LA TLGV +LIV VNKMD +S+ R++EI+++
Sbjct: 208 LVISARKGEFETGYERGGQTREHVQLAKTLGVSKLIVVVNKMDDPTVNWSKERYDEIEQK 267
Query: 182 VSSYIKKIGYNPAA-VAFVPISG 247
+ ++K GYN V F+PISG
Sbjct: 268 MVPFLKASGYNTKKDVVFLPISG 290
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/64 (35%), Positives = 36/64 (56%)
Frame = +1
Query: 334 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAT 513
G E LD+I P R + P R+P+ D +K +GTV +G+VE+G ++ G +V P
Sbjct: 310 GPSFFEVLDSIEIPPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSIREGDSLVVMPNK 367
Query: 514 SLLK 525
+K
Sbjct: 368 EQVK 371
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 504 PRNITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 683
P +V ++ + ++ A PG+N+ + + +++ G+V S NP +F
Sbjct: 365 PNKEQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVL-SSIVNPVPAVTEFV 423
Query: 684 AQVIVLN--HPGQISNGYTPVLDCH 752
AQ+ +L + GY +L H
Sbjct: 424 AQLQILELLDNAIFTAGYKAILHIH 448
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +2
Query: 2 LIVAAGTGEFEAGISK-NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKK 178
L++ A G FEAG GQTREHA + GV+Q+IV +NKMD YS+ RF+ IK+
Sbjct: 346 LVIDASVGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAINKMDIV--GYSKERFDLIKQ 403
Query: 179 EVSSYIKKIGYNPAAVAFVPIS 244
V S+++ + +++ ++P+S
Sbjct: 404 HVGSFLQSCRFKDSSLTWIPLS 425
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 334 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPV-GRVETGVLKPGTIVVFAPA 510
G CL++A+D++ P R KPL +P+ D + G V G++E G ++PG+ V+ P+
Sbjct: 447 GPCLLDAVDSVKSPDRDVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKVMVMPS 506
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +1
Query: 343 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 486
L++A+D +P P R DKP +P++DV+ I G GTV GR+E GV+K G
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVG 297
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 56 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIK 199
QT+EH LLA +GV L+ +NK+D + P E +E+ S+ K
Sbjct: 170 QTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYK 217
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 513 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 692
+ + V VEM + L GDNVG ++ + ++++RG V +K K F A++
Sbjct: 312 LKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEI 369
Query: 693 IVL 701
VL
Sbjct: 370 YVL 372
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 343 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 495
L++A+D +P P R T+ P L ++DV+ I G GTV GRVE G +K G V
Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVKVGETV 320
Score = 34.7 bits (76), Expect = 0.070
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 525 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 635
V VEM + L EA+ GDNVG ++ + +++RG V
Sbjct: 333 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMV 369
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 56 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFE-EIKKEVSSY 193
QT+EH LLA +GV ++V +NK D + E E+++ +SSY
Sbjct: 182 QTKEHILLAKQVGVPDMVVFLNKEDQVDDAELLELVELEVRELLSSY 228
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3
Query: 699 LNHPGQISNGYTPVLDCHTAHM 764
+NH GQI NGYTPVLDCHT+H+
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHI 22
>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
ornithine--oxo-acid aminotransferase, putative similar
to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
(Ornithine--oxo-acid aminotransferase) [Aspergillus
nidulans] {Emericella nidulans}; contains Pfam profile
PF00202: aminotransferase, class III
Length = 475
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +2
Query: 86 TLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHETTC 265
T GV++ G+ + +S PP S R E++ E S++ Y+P V F +G +T
Sbjct: 18 TAGVRRSYGGLPQSNSKSPPSSSQRLMELESEFSAH----NYHPVPVVFSRANG---STI 70
Query: 266 WSLQPK 283
W + K
Sbjct: 71 WDPEGK 76
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +1
Query: 295 KGW--QVERKEGKADGKCLIEALDAIL----PPARPTDKPLRLPLQDVYKIGGIGTVPVG 456
+GW K+ D K + + LDA++ PP D+P + + + K +G + G
Sbjct: 82 EGWASSTYTKDPPVDAKNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTG 141
Query: 457 RVETGVLKPG 486
RV +GV++ G
Sbjct: 142 RVTSGVVRVG 151
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 316 KEGKADGKCLIEALDAILPPARPTDKP 396
KE +A G + +ALD +PP RP KP
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100
>At4g38760.1 68417.m05489 hypothetical protein KIAA0169 gene, Homo
sapiens, D79991
Length = 561
Score = 29.1 bits (62), Expect = 3.5
Identities = 37/139 (26%), Positives = 54/139 (38%), Gaps = 4/139 (2%)
Frame = -3
Query: 650 FGVTSNIT---TTQFLD-GHVLYVETYIVSRYSFLESFVVHLHRLDFSSDVAGAKTTMVP 483
+G T ++ T +F+D L++ V E+F++ L L F S+V T V
Sbjct: 28 YGTTDSVAQELTQEFIDMSSFLHINQCFVVWVESCEAFLLTL-LLSFYSNVILEDTASVL 86
Query: 482 GFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMRHFPSALPSLRSTC 303
PV T I+ S R S+ ++ S R S L L S+C
Sbjct: 87 -HTAPVPTKVYKAYSHTCII-CSVYAPREESSIKEEAVKLISDGLERRQSSVLEDLLSSC 144
Query: 302 HPLNQGILVEGSNMLSRAI 246
P N GIL N A+
Sbjct: 145 FPKNMGILSGSYNFSKLAV 163
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 253 RDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 363
+ ++ T W KG++V EGK CL EA++A
Sbjct: 185 KQTSIDSGTLSKWTKGFKVSGMEGKNVVACLNEAMEA 221
>At5g07670.1 68418.m00878 F-box family protein similar to unknown
protein (pir||C71419) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 476
Score = 28.7 bits (61), Expect = 4.6
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Frame = -3
Query: 680 KICSTLRWVVF----GVTSNITTTQFLDGHV--LYVETYIVSRYSFLESFVVHLHRLDFS 519
K+C R +VF G+ ++I + G V LY+E + S LES ++H H L+
Sbjct: 360 KMCEAAREIVFQDCWGLDNDIFSLAMAFGRVKLLYLEGCSLLTTSGLESVILHWHELEHL 419
Query: 518 SDVAGAKTTMVPGFNTPVSTLPTGTVPIP--PILYTSCRGRRRGLSVGRAGGR 366
V K + +S L + V + P + G +G GG+
Sbjct: 420 K-VVSCKNIKDSEVSPSLSALFSALVELQWRPDTRSHLSSSLTGTGIGEKGGK 471
>At2g39560.1 68415.m04853 expressed protein
Length = 233
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 491 MVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLS 387
+ P + TP ++ T P+ P+L SC GR+ +S
Sbjct: 144 ITPPYLTPRASPSLFTPPLTPLLMESCNGRKEEIS 178
>At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein
similar to 1,4-alpha-glucan branching enzyme [Solanum
tuberosum] GI:1621012, 1,4-alpha-glucan branching enzyme
(EC 2.4.1.18) from [Homo sapiens] SP|Q04446, {Solanum
tuberosum} SP|P30924; contains Pfam profiles: PF00128
Alpha amylase catalytic domain, PF02922 Isoamylase
N-terminal domain
Length = 777
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +2
Query: 149 SEPR---FEEIKKEVSSYIKKIGYNPAAVAFVP 238
SEP+ FEE K+V ++K+ GYN + VP
Sbjct: 257 SEPKVSTFEEFTKKVLPHVKRAGYNAIQLIGVP 289
>At1g21530.1 68414.m02693 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to cDNA adenosine monophosphate
binding protein 10 AMPBP10 (AMPBP10) GI:20799728
Length = 547
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 218 AAVAFVPISGWHETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKL 355
AAV P W ET C + KC + DG V + ++ E KL
Sbjct: 466 AAVVAKPDKMWGETPCAFVSLKCDNNGDGSVPVTEREIREFCKTKL 511
>At5g19490.1 68418.m02322 repressor protein-related similar to
repressor protein [Oryza sativa] GI:18481624
Length = 236
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 446 TVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMR 342
T + + +TSC RRG GR+ GR S S++
Sbjct: 92 TTQMHEVKHTSCGRGRRGRGRGRSSGRTGSGLSLK 126
>At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520], Mus musculus [SP|P98200,
SP|P70704], {Bos taurus} SP|Q29449; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1184
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 32 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 190
E+G +TR+H G++ LI+ ++D E R E K VS+
Sbjct: 629 ESGRKYEKETRDHVNEYADAGLRTLILAYRELDENEYEVFTERISEAKNSVSA 681
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,015,126
Number of Sequences: 28952
Number of extensions: 473782
Number of successful extensions: 1662
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1657
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -