Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0786
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    52   1e-07
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    29   0.86 
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    27   2.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   8.0  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   8.0  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
 Frame = +3

Query: 264 NQGFKDQLLALKWVKEHIHNFGGDSNKITVSGESAGAIAVDFHLMY-----NKEKLFHKA 428
           N GF DQ L L+W  +HI +FGG+   I V G SAG+ +  F L+Y        ++  +A
Sbjct: 164 NFGFWDQRLGLEWTYKHIESFGGNKENIAVGGISAGSYSALFQLIYETYHPEANQIIKRA 223

Query: 429 IIQS-GTTLSPVFYEPSRNAPILIAEKLG 512
           ++ S G ++ P   E S+     +A+K G
Sbjct: 224 LLLSNGLSVQPKSVEESQIQFNELAQKFG 252



 Score = 32.3 bits (70), Expect = 0.070
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = +1

Query: 43  DCLHLNVYVPPSATSKNPVPVMVYIYGGSFRHGD-FGRHVYGPKFLVKH----DVILVTL 207
           DCL LN++VP         PV+ +I+GG  + G+        P+ L         ILV+ 
Sbjct: 81  DCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFILVSP 140

Query: 208 NYRLGPYGFM 237
            +RL  +GF+
Sbjct: 141 GHRLNLFGFL 150


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 115 IYGGSFRHGDFG-RHVYGPKFLVKHDVILVTLNYRLGP 225
           I G S  +G FG   VY P F   HD + +  +YR  P
Sbjct: 291 ILGLSIDYGPFGFLDVYNPSFTPNHDDVFLRYSYRNQP 328


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 345 ITVSGESAGAIAVDFHLMYNKEKLFHKAIIQSGTTLSPVFY 467
           + +SG    +I +D  +  N   +F +   + GT  +P FY
Sbjct: 221 LRISGARIHSITIDLPIKLNGNAVFSEITYKDGTIAAPEFY 261


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = -3

Query: 514  VPSFSAIKIGAFLEGS*KTGDSVVPLCMMALWKSFSLLYIRWKSTAIAPALSPETVILLL 335
            V  ++++K+    +    T D  +PL  M  W S + ++    S +IA  ++  +V+  L
Sbjct: 2132 VLGWTSLKVSKHTDPLRATSD-FIPLFSMQRWNSITSMFFAHASGSIALRIT-GSVLFAL 2189

Query: 334  SPPKLWMCSLTHFK 293
             PP L   +L + K
Sbjct: 2190 VPPALEKYNLENQK 2203


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 488 WCVS-RRLVKDWRQCCPALYDGLMEKLLFII 399
           WC   RR++ D   C   + DGL+E+ L ++
Sbjct: 854 WCPKIRRIIFDEIHCIGQMEDGLVEEQLLLL 884


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 378 AVDFHLMYNKEKLFHKAIIQSGTTLSPVFYEP 473
           +VD+  + N E +    I  SGT  SP  Y P
Sbjct: 380 SVDYTRLDNLEHMRQSCISPSGTNFSPSCYSP 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,094,975
Number of Sequences: 5004
Number of extensions: 66898
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)