Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0785
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   2.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   2.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   4.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   4.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   4.9  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   8.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 251 YSIILSCVEFY*VLFKLVIILIYL 322
           ++ I+  + F+ V+F  +IILI L
Sbjct: 404 FAAIIEWLSFFIVIFTYIIILITL 427


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -2

Query: 316 N*NNY*FK*NLIKFNTTQYN*IFNPFVLK-YYKY*KIE 206
           N NNY +  N   +N   YN  +N    K YY    IE
Sbjct: 325 NNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIE 362


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 165 DFNDRTDQNFKLLHLNFIL 109
           ++N+  + N+K L+ N+I+
Sbjct: 104 NYNNNYNNNYKKLYKNYII 122


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 165 DFNDRTDQNFKLLHLNFIL 109
           ++N+  + N+K L+ N+I+
Sbjct: 104 NYNNNYNNNYKKLYKNYII 122


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 310 NNY*FK*NLIKFNTTQYN 257
           NNY +  N  K+N   YN
Sbjct: 320 NNYNYNNNNYKYNYNNYN 337


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 142 LICSIIKILHDLSSNRCE 195
           L+ +  ++LH L+S +CE
Sbjct: 400 LLSAYGELLHALTSGKCE 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,182
Number of Sequences: 438
Number of extensions: 1253
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)