Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0782
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    28   1.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.9  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    27   3.9  

>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
 Frame = -3

Query: 762 IYYKIYYLFTHFTLIIIIQSKQAPHGLTVPVWNKCIVNR-------KTHSIVTDFRERHF 604
           +Y  + +   H    II    Q PHG     W K I+N          H+   DF+ +  
Sbjct: 206 LYNTLAHEVCHLACWIIDNEMQNPHGACFKAWGKRIMNNMPYIEITSKHNYDIDFKYKWL 265

Query: 603 LIIK*YNRKYMNH 565
            I +  N+ Y  H
Sbjct: 266 CINEKCNKLYGRH 278


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 83  LAERQHSYIVVTLTVNISTSFWSC 12
           L  R +   V T T+N STS WSC
Sbjct: 190 LKNRLYECSVCTDTINPSTSIWSC 213


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 99  INE*IFSRTTTFIYSGYFNSQYKYFVLVLLL 7
           +N  +FS TTT I SG+   ++  F ++L++
Sbjct: 392 LNVFVFSMTTTAILSGFLMKRFGRFKMLLMI 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,087
Number of Sequences: 5004
Number of extensions: 50863
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)