Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0782
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688...    30   1.8  
01_01_0627 + 4725891-4725977,4727389-4727584,4727836-4727934,472...    28   7.1  

>03_01_0006 +
           65675-65808,66385-66457,68290-68526,68648-68785,
           68871-69005,69131-69310,69495-69701,69821-69943,
           70240-70359,70758-70880,72067-72171,72254-72398,
           73443-73607,73669-73907,74452-74484,74977-75058,
           75200-75360,75739-75951,76789-76971,77051-77220,
           77375-77474
          Length = 1021

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 705 SKQAPHGLTVPVWNKCIVNRKTHSIVTDFRER 610
           SK AP  +     NKC + RK H ++ +F ER
Sbjct: 484 SKGAPEQILNLASNKCEIERKVHHVIGNFAER 515


>01_01_0627 +
           4725891-4725977,4727389-4727584,4727836-4727934,
           4728392-4728443,4728662-4728798,4728880-4728980,
           4729072-4729130,4729285-4729341,4729476-4729521,
           4729650-4729729,4729835-4729925
          Length = 334

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 669 WNKCIVNRKTHSIVTDFRERH 607
           W+ CI     H +V D RERH
Sbjct: 257 WSNCIFRSTLHRVVLDGRERH 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,451,647
Number of Sequences: 37544
Number of extensions: 235556
Number of successful extensions: 337
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)