Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0782
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_1374| Best HMM Match : PAN (HMM E-Value=0.013)                      29   4.1  

>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -1

Query: 590  NITENT*IIYFAIN----DTFNCNAVNTVQFIIYKTMTIILM 477
            NI  NT IIY  IN    +T N   +NT+  II  T TII++
Sbjct: 1395 NIIINTIIIYTTINTIIINTINTIIINTMNTIIVTTTTIIII 1436


>SB_1374| Best HMM Match : PAN (HMM E-Value=0.013)
          Length = 498

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 532 LQLNVSLIAK*MIHVFSVILFNDEKMSLSKISHNTVCFAINDTFV 666
           + +NV   AK   H  S I+ +     L +  HN   F++N TF+
Sbjct: 152 ITVNVKSYAKGSFHGLSEIIVDGTDYCLKQRGHNFAAFSMNGTFI 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,420,377
Number of Sequences: 59808
Number of extensions: 320325
Number of successful extensions: 649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)