Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0782
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H...    29   3.6  
AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchange...    29   3.6  
AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchange...    29   3.6  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   6.3  
AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical...    28   6.3  

>AF497830-1|AAM18108.1|  533|Caenorhabditis elegans putative Na-H
           exchanger isoform 6 protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 536 CNAVNTVQF-IIYKTMTIILMIHKTRLYKLNR 444
           C  V TV F +IY+T+ +++M H    Y+LN+
Sbjct: 365 CFIVLTVVFCLIYRTLGVVVMCHFLNKYRLNK 396


>AF098995-2|AAC67478.2|  538|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform a protein.
          Length = 538

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 536 CNAVNTVQF-IIYKTMTIILMIHKTRLYKLNR 444
           C  V TV F +IY+T+ +++M H    Y+LN+
Sbjct: 365 CFIVLTVVFCLIYRTLGVVVMCHFLNKYRLNK 396


>AF098995-1|AAR30204.1|  634|Caenorhabditis elegans Na/h exchanger
           protein 6, isoform b protein.
          Length = 634

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 536 CNAVNTVQF-IIYKTMTIILMIHKTRLYKLNR 444
           C  V TV F +IY+T+ +++M H    Y+LN+
Sbjct: 365 CFIVLTVVFCLIYRTLGVVVMCHFLNKYRLNK 396


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 335 FALKSCFYYPLNYIFFYFFLSSEREILPTGFQERPI---LCLIYTIAS 469
           F L SCFY P  Y+     L+   E++ T F+E  +   LC ++  A+
Sbjct: 426 FPLPSCFYNPSGYVCCNLMLN---ELMSTSFEEVKVATNLCNVHKFAT 470


>AC024817-54|AAF59564.1|  229|Caenorhabditis elegans Hypothetical
           protein Y54G2A.27 protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 353 FYYPLNYIFFYFFLSSEREILPTGF 427
           FYY   + FF+FF S   ++ P G+
Sbjct: 171 FYYYYCFFFFFFFFSGRIDLTPPGW 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,557,116
Number of Sequences: 27780
Number of extensions: 276984
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)