Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0782
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69790.1 68414.m08030 protein kinase, putative similar to pro...    29   2.6  
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa...    28   5.9  

>At1g69790.1 68414.m08030 protein kinase, putative similar to
           protein kinase APK1A [Arabidopsis thaliana]
           SWISS-PROT:Q06548
          Length = 387

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 56  LYMNVVVLLNIHSFIPKFYRRQILISRTLADF*LPYKANKKKTF 187
           +Y   VVLL + S  P   + ++ + R L D+ +PY  +++K F
Sbjct: 275 VYSFGVVLLELLSGRPTLDKSKVGVERNLVDWAIPYLVDRRKVF 318


>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 480

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 675 PVWNKCIVNRKTHSIVTDFRERHFLI 598
           P+ NKC+VNR+T  +     +   LI
Sbjct: 262 PIQNKCVVNRETKEVPVQVNQNSLLI 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,863,740
Number of Sequences: 28952
Number of extensions: 226489
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)