Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0780
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.3  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   8.4  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   8.4  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 369 IPYFTTSGIQVRYLKIIEKSGY 434
           I  F TSG++   L+ ++KSGY
Sbjct: 157 ITSFETSGLRPHLLENVKKSGY 178


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 118 KSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITCQSNHFQ 273
           K + K  ST N    +I V  +    +     GS   +PEQ  +  +  +FQ
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSKGISPEQEELIHRLVYFQ 326


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 333 VDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSG 431
           +D KP +  + E  Y  +   + +Y   +EK+G
Sbjct: 89  IDNKPDMWKQLEAKYDPSGEYRSKYKDELEKNG 121


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 471 HSE*CTLPKVGLGIHFFQ*FSDILLEF 391
           H+E C L +V   I+ FQ F  +L  F
Sbjct: 218 HNELCNLCQVANSIYGFQNFLFVLSTF 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,844
Number of Sequences: 336
Number of extensions: 3383
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)