Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0780
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 126 1e-29
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 126 3e-29
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 83 3e-16
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 50 2e-06
08_02_0635 + 19551869-19551996,19553131-19553233 29 3.1
06_01_0465 - 3304417-3306834 28 9.6
04_04_1223 + 31851545-31852609,31854314-31854773,31856201-318562... 28 9.6
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 126 bits (305), Expect = 1e-29
Identities = 58/79 (73%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Frame = +3
Query: 258 IKSFPGGKEYLMRAHFGLPSVECEEV--DGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSG 431
+KSFPGGK+Y+ RA F LPS+ EE + K PI+VKFEIPYFT SGIQVRYLKIIEKSG
Sbjct: 349 VKSFPGGKDYMCRAEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSG 408
Query: 432 YQALPWVRYITQNGDYQLR 488
YQALPWVRYIT G+Y+LR
Sbjct: 409 YQALPWVRYITMAGEYELR 427
Score = 120 bits (288), Expect = 2e-27
Identities = 51/90 (56%), Positives = 71/90 (78%)
Frame = +1
Query: 1 DGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPA 180
DG F+LM+YRL+T VKPLIW+E+ IE+H+ SR+E M+KA+SQFK RSTA NVEI +PVP+
Sbjct: 263 DGSFDLMTYRLSTQVKPLIWVEAQIEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPS 322
Query: 181 DADSPKFKTTIGSVKYTPEQNAITCQSNHF 270
DA +P +T++GS Y PE++A+ + F
Sbjct: 323 DATNPNIRTSMGSAAYAPERDAMVWKVKSF 352
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 126 bits (303), Expect = 3e-29
Identities = 59/79 (74%), Positives = 66/79 (83%), Gaps = 2/79 (2%)
Frame = +3
Query: 258 IKSFPGGKEYLMRAHFGLPSVECEE--VDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSG 431
IKSFPGGKEY+ RA F LPS+ E+ + K PI+VKFEIPYFT SGIQVRYLKIIEKSG
Sbjct: 324 IKSFPGGKEYMCRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSG 383
Query: 432 YQALPWVRYITQNGDYQLR 488
YQALPWVRYIT G+Y+LR
Sbjct: 384 YQALPWVRYITMAGEYELR 402
Score = 112 bits (269), Expect = 3e-25
Identities = 46/90 (51%), Positives = 68/90 (75%)
Frame = +1
Query: 1 DGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPA 180
DG F+LM+YRL+T VKPLIW+E+ +E+H+ SR++ +K +SQFK RSTA NVEI +PVP
Sbjct: 238 DGSFDLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITVKTRSQFKERSTATNVEIEVPVPE 297
Query: 181 DADSPKFKTTIGSVKYTPEQNAITCQSNHF 270
D+ +P +T++GS Y PE++A+ + F
Sbjct: 298 DSTNPNIRTSMGSAAYAPERDAMVWKIKSF 327
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 82.6 bits (195), Expect = 3e-16
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Frame = +3
Query: 258 IKSFPGGKEYLMRAHFGLPSVECEEVD-GKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGY 434
I+ FPG E M A L S E+ +PPIQ++F++P FT SG++VR+LK+ EKSGY
Sbjct: 360 IRKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKVWEKSGY 419
Query: 435 QALPWVRYITQNGDYQLR 488
+ WVRYIT+ G Y++R
Sbjct: 420 NTVEWVRYITRAGSYEIR 437
Score = 54.4 bits (125), Expect = 1e-07
Identities = 29/90 (32%), Positives = 43/90 (47%)
Frame = +1
Query: 1 DGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPA 180
DGEFELM YR+ V + I+ +R+E +K KS F + A V + +PVP
Sbjct: 274 DGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEINVKVKSVFGAKMFALGVVVKVPVPK 333
Query: 181 DADSPKFKTTIGSVKYTPEQNAITCQSNHF 270
F+TT G KY +++ + F
Sbjct: 334 QTAKTSFQTTSGKAKYNASIDSLVWKIRKF 363
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 348 PIQVKFEIPYFTTSGIQVRYLKIIEKS-GYQALPWVRYITQNGDYQLR 488
P+ + F IP + TS +QVRYL+I +KS Y WVRY+TQ Y R
Sbjct: 371 PVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVAR 418
Score = 35.5 bits (78), Expect = 0.048
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +1
Query: 1 DGEFELMSYRLNTHVKPLIWIESVIERHAHSRV----EYMIKAKSQFKRRS 141
DGEF +M+YR+ KP + ++IE SR+ E+ ++AK F + S
Sbjct: 282 DGEFAVMNYRITQEFKPPFRVTALIEEAGPSRIVGGSEHTLRAKLTFSQES 332
>08_02_0635 + 19551869-19551996,19553131-19553233
Length = 76
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 512 WSFNRNCISHKNFIYAKIVI 571
WSFN+ C+ NFI+ +++I
Sbjct: 42 WSFNKICLQRTNFIHLQLII 61
>06_01_0465 - 3304417-3306834
Length = 805
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 467 EW*LSVKNKLKSTFIWSFNRNCISHKNFIYAKI 565
+W K +T IW+ N N S+ FI+ KI
Sbjct: 322 DWSQGCSYKANATLIWNNNANSKSNHGFIFKKI 354
>04_04_1223 +
31851545-31852609,31854314-31854773,31856201-31856250,
31856333-31856463,31856569-31856665,31856759-31856950,
31857121-31857123
Length = 665
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +3
Query: 276 GKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALP 446
GKE L+RA + L S+ + P YFT + LK +EKS + P
Sbjct: 78 GKERLVRAKYSL-SLVARDGRASPLAGDTLRSHYFTPTSRSADVLKFVEKSNLSSSP 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,428
Number of Sequences: 37544
Number of extensions: 308106
Number of successful extensions: 546
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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