Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0780
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   3e-06
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)     43   2e-04
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)         35   0.085
SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)     31   1.4  
SB_17635| Best HMM Match : CUB (HMM E-Value=0)                         30   2.4  
SB_15068| Best HMM Match : COX7a (HMM E-Value=6.2)                     28   9.8  

>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 258 IKSFPGGKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEK-SGY 434
           +KS  GG E  +     L            P+ + FEIP +  SG+Q+R LK+ EK   Y
Sbjct: 247 VKSIRGGAEVAINIKLKLKDKAKSARKELGPVSLDFEIPMYICSGLQIRSLKVYEKEKAY 306

Query: 435 QALPWVRYITQN 470
               WVRYIT +
Sbjct: 307 HPFRWVRYITHS 318


>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
 Frame = +3

Query: 360 KFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGDYQLR 488
           K E+P F  SG++VRYLK+ E     S +  + WVRYI+++G Y+ R
Sbjct: 285 KIEVP-FACSGLKVRYLKVFEPKLNYSDHDTIKWVRYISRSGLYETR 330


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score = 34.7 bits (76), Expect = 0.085
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +1

Query: 1   DGEFELMSYRLNTH 42
           DGEFELMSYRLNTH
Sbjct: 203 DGEFELMSYRLNTH 216


>SB_44501| Best HMM Match : Adap_comp_sub (HMM E-Value=2.39622e-43)
          Length = 822

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
 Frame = +1

Query: 10  FELMSYRLNTHVKPL-IWIESVIERHAHSRVEYM--IKAKSQFKRRSTA-NNVEIIIPVP 177
           FEL+ +R N   KPL ++++S I  H+  R+E    I+   + K    A NNV   +P+P
Sbjct: 604 FELLRFRSNLK-KPLPLYVKSSITLHSEQRIELRAEIQLCQETKMAKYARNNVVFQLPIP 662

Query: 178 ADADSPKFKT 207
            +   P F+T
Sbjct: 663 -ETWVPLFRT 671


>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
          Length = 630

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 437 LVSTFFNNFQISYLNSRSCEIRYFKFY 357
           +VS  FN F +  L   +CE  Y +FY
Sbjct: 328 IVSVIFNEFDVGTLEDSNCEENYVEFY 354


>SB_15068| Best HMM Match : COX7a (HMM E-Value=6.2)
          Length = 128

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 55  IWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIP 171
           +W+ES ++R   + V  +IK  S+  +    NN E   P
Sbjct: 17  LWVESQVQRENDTEVLTVIKTTSEHYKNRIVNNWETFDP 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,306,689
Number of Sequences: 59808
Number of extensions: 381172
Number of successful extensions: 837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)