Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0780
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 151 7e-37
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 151 7e-37
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 143 1e-34
Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical pr... 109 3e-24
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 53 3e-07
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 53 3e-07
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 53 3e-07
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 38 0.011
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr... 31 1.2
AB038044-1|BAB62394.1| 852|Caenorhabditis elegans N-deacetylase... 28 8.6
AB037942-1|BAB61757.1| 814|Caenorhabditis elegans N-deacetylase... 28 8.6
AB037941-1|BAB61756.1| 826|Caenorhabditis elegans N-deactylase/... 28 8.6
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 151 bits (365), Expect = 7e-37
Identities = 71/90 (78%), Positives = 79/90 (87%)
Frame = +1
Query: 1 DGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPA 180
DG FELMSYRL T VKPLIWIE+ IERH+HSRV ++IKAKSQFKRRSTANNVEIIIPVP+
Sbjct: 258 DGAFELMSYRLTTVVKPLIWIETSIERHSHSRVSFIIKAKSQFKRRSTANNVEIIIPVPS 317
Query: 181 DADSPKFKTTIGSVKYTPEQNAITCQSNHF 270
DADSPKFKT+IGSVKYTPEQ+A +F
Sbjct: 318 DADSPKFKTSIGSVKYTPEQSAFVWTIKNF 347
Score = 143 bits (347), Expect = 1e-34
Identities = 63/78 (80%), Positives = 72/78 (92%)
Frame = +3
Query: 255 SIKSFPGGKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGY 434
+IK+FPGGKEYL+ AH LPSV EE +G+PPI+VKFEIPYFTTSGIQVRYLKIIEKSGY
Sbjct: 343 TIKNFPGGKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGY 402
Query: 435 QALPWVRYITQNGDYQLR 488
QALPWVRYITQNG+Y++R
Sbjct: 403 QALPWVRYITQNGEYEMR 420
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 151 bits (365), Expect = 7e-37
Identities = 71/90 (78%), Positives = 79/90 (87%)
Frame = +1
Query: 1 DGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPA 180
DG FELMSYRL T VKPLIWIE+ IERH+HSRV ++IKAKSQFKRRSTANNVEIIIPVP+
Sbjct: 258 DGAFELMSYRLTTVVKPLIWIETSIERHSHSRVSFIIKAKSQFKRRSTANNVEIIIPVPS 317
Query: 181 DADSPKFKTTIGSVKYTPEQNAITCQSNHF 270
DADSPKFKT+IGSVKYTPEQ+A +F
Sbjct: 318 DADSPKFKTSIGSVKYTPEQSAFVWTIKNF 347
Score = 141 bits (342), Expect = 4e-34
Identities = 62/78 (79%), Positives = 71/78 (91%)
Frame = +3
Query: 255 SIKSFPGGKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGY 434
+IK+FPGGKEYL+ AH LPSV EE +G+PPI+VKFEIPYFTTSGIQVRYLKIIEK GY
Sbjct: 343 TIKNFPGGKEYLLTAHLSLPSVMSEESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEKRGY 402
Query: 435 QALPWVRYITQNGDYQLR 488
QALPWVRYITQNG+Y++R
Sbjct: 403 QALPWVRYITQNGEYEMR 420
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 143 bits (347), Expect = 1e-34
Identities = 61/78 (78%), Positives = 73/78 (93%)
Frame = +3
Query: 255 SIKSFPGGKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGY 434
SI+SFPGG+EY+MR+ F LPS+ EE++G+PPI VKFEIPY+TTSG+QVRYLKIIEKSGY
Sbjct: 347 SIRSFPGGREYIMRSSFMLPSIGSEELEGRPPINVKFEIPYYTTSGLQVRYLKIIEKSGY 406
Query: 435 QALPWVRYITQNGDYQLR 488
QALPWVRY+TQNGDYQ+R
Sbjct: 407 QALPWVRYVTQNGDYQMR 424
Score = 142 bits (344), Expect = 3e-34
Identities = 64/94 (68%), Positives = 74/94 (78%)
Frame = +1
Query: 1 DGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPA 180
DGEFELMSYRL T VKPLIW+E+ +ERHAHSRVEYM+KAKSQFKR+S AN+VE+IIPVP+
Sbjct: 262 DGEFELMSYRLTTQVKPLIWVEAAVERHAHSRVEYMVKAKSQFKRQSVANHVEVIIPVPS 321
Query: 181 DADSPKFKTTIGSVKYTPEQNAITCQSNHFQEAR 282
D +PKFKT G+ KY PE NAI F R
Sbjct: 322 DVSAPKFKTGAGTAKYVPELNAIVWSIRSFPGGR 355
>Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical
protein K11D2.3b protein.
Length = 58
Score = 109 bits (261), Expect = 3e-24
Identities = 47/54 (87%), Positives = 53/54 (98%)
Frame = +3
Query: 327 EEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLR 488
EE +G+PPI+VKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNG+Y++R
Sbjct: 3 EESEGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYEMR 56
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Frame = +3
Query: 258 IKSFPGGKEYLMRAHFGLPSVECEEVD--GKPPIQVKFEIPYFTTSGIQVRYLKIIEK-- 425
IK G KE + A L S E +PP+ + FE+P F SG++VRYLK+ E
Sbjct: 359 IKRMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVP-FAPSGLKVRYLKVFEPKL 417
Query: 426 --SGYQALPWVRYITQNGDYQLR 488
S + + WVRYI ++G Y+ R
Sbjct: 418 NYSDHDVIKWVRYIGRSGLYETR 440
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = +1
Query: 1 DGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPA 180
DGE+ELM YR ++ + ++ + +++E + KS FK A +E+ IP P
Sbjct: 273 DGEYELMRYRTTKDIQLPFRVIPLVREVSRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPP 332
Query: 181 DADSPKFKTTIGSVKYTPEQNAI 249
+ + G KY +NAI
Sbjct: 333 NTSGVQLICMKGKAKYKAGENAI 355
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Frame = +3
Query: 258 IKSFPGGKEYLMRAHFGLPSVECEEVD--GKPPIQVKFEIPYFTTSGIQVRYLKIIEK-- 425
IK G KE + A L S E +PP+ + FE+P F SG++VRYLK+ E
Sbjct: 353 IKRMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVP-FAPSGLKVRYLKVFEPKL 411
Query: 426 --SGYQALPWVRYITQNGDYQLR 488
S + + WVRYI ++G Y+ R
Sbjct: 412 NYSDHDVIKWVRYIGRSGLYETR 434
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = +1
Query: 1 DGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPA 180
DGE+ELM YR ++ + ++ + +++E + KS FK A +E+ IP P
Sbjct: 267 DGEYELMRYRTTKDIQLPFRVIPLVREVSRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPP 326
Query: 181 DADSPKFKTTIGSVKYTPEQNAI 249
+ + G KY +NAI
Sbjct: 327 NTSGVQLICMKGKAKYKAGENAI 349
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 52.8 bits (121), Expect = 3e-07
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Frame = +3
Query: 258 IKSFPGGKEYLMRAHFGLPSVECEEVD--GKPPIQVKFEIPYFTTSGIQVRYLKIIEK-- 425
IK G KE + A L S E +PP+ + FE+P F SG++VRYLK+ E
Sbjct: 359 IKRMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVP-FAPSGLKVRYLKVFEPKL 417
Query: 426 --SGYQALPWVRYITQNGDYQLR 488
S + + WVRYI ++G Y+ R
Sbjct: 418 NYSDHDVIKWVRYIGRSGLYETR 440
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = +1
Query: 1 DGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPA 180
DGE+ELM YR ++ + ++ + +++E + KS FK A +E+ IP P
Sbjct: 273 DGEYELMRYRTTKDIQLPFRVIPLVREVSRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPP 332
Query: 181 DADSPKFKTTIGSVKYTPEQNAI 249
+ + G KY +NAI
Sbjct: 333 NTSGVQLICMKGKAKYKAGENAI 355
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 37.5 bits (83), Expect = 0.011
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +3
Query: 306 GLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQL 485
G +V V PPI +KF+I SG++V L + + Y+ V+YIT+ G + +
Sbjct: 354 GSVAVSGTTVAENPPISLKFKINQLVLSGLKVNRLDMYGEK-YKPFKGVKYITKAGKFTI 412
Query: 486 RT 491
RT
Sbjct: 413 RT 414
>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
C13F10.4 protein.
Length = 2076
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +3
Query: 600 FVSLLLMKSASKQSRLALDRSVTNVKIMLTLKKLSCRAPLDVICTFQFQFNKIIFLI 770
F S+L M ++ R+ LD+ + IM+T + AP+DV+ Q FNK+I L+
Sbjct: 1831 FYSVLNMSEDNE--RIQLDKCI----IMVTAVVFTTSAPVDVVLGHQESFNKLIVLL 1881
>AB038044-1|BAB62394.1| 852|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 852
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +1
Query: 37 THVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEII 165
T + L+ ++S+ RH + ++ + K QFK + + N+ ++
Sbjct: 74 TDARILVILDSLFSRHGKTIIQILNSQKLQFKAEAVSKNLPVL 116
>AB037942-1|BAB61757.1| 814|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 814
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +1
Query: 37 THVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEII 165
T + L+ ++S+ RH + ++ + K QFK + + N+ ++
Sbjct: 36 TDARILVILDSLFSRHGKTIIQILNSQKLQFKAEAVSKNLPVL 78
>AB037941-1|BAB61756.1| 826|Caenorhabditis elegans
N-deactylase/N-sulfotransferase protein.
Length = 826
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/43 (23%), Positives = 24/43 (55%)
Frame = +1
Query: 37 THVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEII 165
T + L+ ++S+ RH + ++ + K QFK + + N+ ++
Sbjct: 48 TDARILVILDSLFSRHGKTIIQILNSQKLQFKAEAVSKNLPVL 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,784,465
Number of Sequences: 27780
Number of extensions: 309021
Number of successful extensions: 749
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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