Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0780
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   1.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   1.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   1.8  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.6  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   5.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   5.6  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   7.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.7  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +3

Query: 279 KEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRY 458
           K   ++  FGLP      +   P  +   +  YF   G +V      +   + A PW  Y
Sbjct: 255 KVIYVKRFFGLPVGVTAAI---PTSENPADYRYFCPDGSKVPIDANTKPCTWAARPWQGY 311

Query: 459 ITQNG 473
           +T NG
Sbjct: 312 MTNNG 316


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +3

Query: 279 KEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRY 458
           K   ++  FGLP      +   P  +   +  YF   G +V      +   + A PW  Y
Sbjct: 255 KVIYVKRFFGLPVGVTAAI---PTSENPADYRYFCPDGSKVPIDANTKPCTWAARPWQGY 311

Query: 459 ITQNG 473
           +T NG
Sbjct: 312 MTNNG 316


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +3

Query: 279 KEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRY 458
           K   ++  FGLP      +   P  +   +  YF   G +V      +   + A PW  Y
Sbjct: 255 KVIYVKRFFGLPVGVTAAI---PTSENPADYRYFCPDGSKVPIDANTKPCTWAARPWQGY 311

Query: 459 ITQNG 473
           +T NG
Sbjct: 312 MTNNG 316


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 282 EYLMRAHFGLPSVECEE 332
           EY +R HFG    +CE+
Sbjct: 5   EYHLRNHFGSKPFKCEK 21


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 333 VDGKPPIQVKFEIPYFTTSGIQVRYLK 413
           +D KP I V  E  Y  T   +  YL+
Sbjct: 94  IDNKPEIWVLLEAKYDPTGAYKQHYLQ 120


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 333 VDGKPPIQVKFEIPYFTTSGIQVRYLK 413
           +D KP I V  E  Y  T   +  YL+
Sbjct: 94  IDNKPEIWVLLEAKYDPTGAYKQHYLQ 120


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +3

Query: 327 EEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQ 437
           ++VD + P+  +    Y    G QV    + +++G+Q
Sbjct: 61  KQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQ 97


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 4   GEFELMSYRLNTHVKPLIWIESVIE 78
           G F+  S  L   V+  + +ESVIE
Sbjct: 185 GRFQTTSQNLEDDVEIKVQVESVIE 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,272
Number of Sequences: 438
Number of extensions: 4051
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)